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L3_101_044G1_scaffold_775

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_044G1_scaffold_775_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..175
DNA (174bp) protein (58aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CV83_CLOPF
Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118};; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
L3_101_044G1_scaffold_775_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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561..785
DNA (225bp) protein (75aa)
Protein translocase subunit SecE n=4 Tax=Clostridium perfringens RepID=H7CZC5_CLOPF
secE; preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_101_044G1_scaffold_775_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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823..1344
DNA (522bp) protein (174aa)
Transcription termination/antitermination protein NusG n=6 Tax=Clostridium perfringens RepID=H7CZC4_CLOPF
nusG; transcription antitermination protein NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L3_101_044G1_scaffold_775_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1419..1844
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=6 Tax=Clostridium perfringens RepID=RL11_CLOP1
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000255|HAMAP-Rule:MF_00736}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_101_044G1_scaffold_775_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1902..2591
DNA (690bp) protein (230aa)
50S ribosomal protein L1 n=6 Tax=Clostridium perfringens RepID=RL1_CLOP1
rplA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000255|HAMAP-Rule:MF_01318}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_101_044G1_scaffold_775_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2808..3308
DNA (501bp) protein (167aa)
50S ribosomal protein L10 n=5 Tax=Clostridium perfringens RepID=H7CZC1_CLOPF
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_101_044G1_scaffold_775_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3363..3728
DNA (366bp) protein (122aa)
50S ribosomal protein L7/L12 n=8 Tax=Clostridium perfringens RepID=RL7_CLOP1
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000255|HAMAP-Rule:MF_00368}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_101_044G1_scaffold_775_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4033..7737
DNA (3705bp) protein (1235aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=5 Tax=Clostridium perfringens RepID=RPOB_CLOP1
L3_101_044G1_scaffold_775_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7817..9967
DNA (2151bp) protein (717aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=10 Tax=Clostridium perfringens RepID=RPOC_CLOP1
L3_101_044G1_scaffold_775_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9948..11303
DNA (1356bp) protein (452aa)
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
DNA-directed RNA polymerase subunit beta' n=10 Tax=Clostridium perfringens RepID=RPOC_CLOP1
L3_101_044G1_scaffold_775_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11416..11655
DNA (240bp) protein (80aa)
Ribosomal protein L7AE family n=11 Tax=Clostridium perfringens RepID=Q8XHR8_CLOPE
ribosomal protein L7AE family protein
Ribosomal protein L7AE family protein {ECO:0000313|EMBL:EIA15975.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_101_044G1_scaffold_775_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


11713..12093
DNA (381bp) protein (127aa)
30S ribosomal protein S12 n=10 Tax=Clostridium perfringens RepID=RS12_CLOP1
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000255|HAMAP-Rule:MF_00403}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_101_044G1_scaffold_775_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


12253..12723
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=10 Tax=Clostridium perfringens RepID=RS7_CLOP1
rpsG; 30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000255|HAMAP-Rule:MF_00480}; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
L3_101_044G1_scaffold_775_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12804..14171
DNA (1368bp) protein (456aa)
Elongation factor G n=3 Tax=Clostridium perfringens RepID=EFG_CLOP1
fusA; elongation factor G
Elongation factor G {ECO:0000255|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000255|HAMAP-Rule:MF_00054};; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
L3_101_044G1_scaffold_775_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14282..14818
DNA (537bp) protein (179aa)
Elongation factor G n=3 Tax=Clostridium perfringens RepID=EFG_CLOP1
fusA; elongation factor G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L3_101_044G1_scaffold_775_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14891..14971
DNA (81bp) protein (27aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=D7WAZ2_9CORY
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Displaying 16 items

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