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L3_102_000G1_scaffold_225

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000G1_scaffold_225_1
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..78)
DNA (78bp) protein (26aa)
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase type I n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GMK1_9FIRM
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000313|EMBL:CDB00843.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
L3_102_000G1_scaffold_225_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(222..1022)
DNA (801bp) protein (267aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6Q1R5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24641.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_102_000G1_scaffold_225_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1026..2114)
DNA (1089bp) protein (363aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=2 Tax=Clostridium RepID=B6FS85_9CLOT
L3_102_000G1_scaffold_225_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2137..2577)
DNA (441bp) protein (147aa)
Fe-S iron-sulfur cluster assembly protein, NifU family n=2 Tax=Clostridium RepID=B6FS86_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24639.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L3_102_000G1_scaffold_225_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2609..3790)
DNA (1182bp) protein (394aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=2 Tax=Clostridium RepID=B6FS87_9CLOT
L3_102_000G1_scaffold_225_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3802..4257)
DNA (456bp) protein (152aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Clostridium RepID=B6FS88_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24637.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcriptional regulator, BadM/Rrf2 family
L3_102_000G1_scaffold_225_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4394..5725
DNA (1332bp) protein (444aa)
Putative stage V sporulation protein B n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS89_9CLOT
Putative stage V sporulation protein B {ECO:0000313|EMBL:EEA81159.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L3_102_000G1_scaffold_225_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5740..6282)
DNA (543bp) protein (181aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PV51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24619.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_102_000G1_scaffold_225_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6347..6883)
DNA (537bp) protein (179aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
Hydrolase, NUDIX family n=2 Tax=Clostridium RepID=B6FS91_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24617.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_102_000G1_scaffold_225_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6957..8510)
DNA (1554bp) protein (518aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Ribonuclease Y n=2 Tax=Clostridium RepID=B6FS92_9CLOT
metal dependent phosphohydrolase
L3_102_000G1_scaffold_225_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8583..9197)
DNA (615bp) protein (205aa)
Regulatory protein RecX n=2 Tax=Clostridium RepID=B6FS93_9CLOT
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
recX; recombination regulator RecX
L3_102_000G1_scaffold_225_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9199..10221)
DNA (1023bp) protein (341aa)
Protein RecA n=2 Tax=Clostridium RepID=B6FS94_9CLOT
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
protein RecA
L3_102_000G1_scaffold_225_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10454..11284)
DNA (831bp) protein (277aa)
Transporter, SSS family n=2 Tax=Clostridium RepID=B6FS95_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24611.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Na+/solute symporter
L3_102_000G1_scaffold_225_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11321..12004)
DNA (684bp) protein (228aa)
Transporter, SSS family n=2 Tax=Clostridium RepID=B6FS95_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24611.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Na+/proline symporter
L3_102_000G1_scaffold_225_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12115..12594)
DNA (480bp) protein (160aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
mgsA; methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=2 Tax=Clostridium RepID=B6FS96_9CLOT
L3_102_000G1_scaffold_225_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12613..14181)
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS97_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81167.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC transporter permease
L3_102_000G1_scaffold_225_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14181..14876)
DNA (696bp) protein (232aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FS98_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24605.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC transporter ATP-binding protein
L3_102_000G1_scaffold_225_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14965..15636)
DNA (672bp) protein (224aa)
Bacterial transferase hexapeptide repeat protein n=2 Tax=Clostridium RepID=B6FS99_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24604.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_000G1_scaffold_225_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15643..17643)
DNA (2001bp) protein (667aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Topoisomerase IA (EC:5.99.1.2)
DNA topoisomerase n=3 Tax=Clostridium RepID=R6PJU5_9CLOT
L3_102_000G1_scaffold_225_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17740..18825)
DNA (1086bp) protein (362aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EEA81059.1}; EC=1.2.1.11 {ECO:0000313|EMBL:EEA81059.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=2 Tax=Clostridium RepID=B6FSA3_9CLOT
L3_102_000G1_scaffold_225_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18905..20299)
DNA (1395bp) protein (465aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=2 Tax=Clostridium RepID=B6FSA4_9CLOT
L3_102_000G1_scaffold_225_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20318..20971)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSA5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81061.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_102_000G1_scaffold_225_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21072..21839
DNA (768bp) protein (256aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FSA6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24595.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L3_102_000G1_scaffold_225_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21832..22629
DNA (798bp) protein (266aa)
ABC transporter, permease protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSA7_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEA81063.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L3_102_000G1_scaffold_225_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22695..23486)
DNA (792bp) protein (264aa)
Cof-like hydrolase n=2 Tax=Clostridium RepID=B6FSA8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24509.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
HAD-superfamily hydrolase, subfamily IIB
L3_102_000G1_scaffold_225_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23736..24650)
DNA (915bp) protein (305aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=2 Tax=Clostridium RepID=B6FSA9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24500.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Small-conductance mechanosensitive channel
L3_102_000G1_scaffold_225_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24660..25511)
DNA (852bp) protein (284aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FSB0_9CLOT
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical protein TIGR00726
L3_102_000G1_scaffold_225_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25522..25875)
DNA (354bp) protein (118aa)
UPF0102 protein CLONEX_03036 n=2 Tax=Clostridium RepID=B6FSB1_9CLOT
UPF0102 protein CLONEX_03036 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
conserved hypothetical protein TIGR00252
L3_102_000G1_scaffold_225_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25912..26670)
DNA (759bp) protein (253aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=2 Tax=Clostridium RepID=B6FSB2_9CLOT
L3_102_000G1_scaffold_225_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26663..27208)
DNA (546bp) protein (182aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUS5_9CLOT
Displaying items 1-30 of 102 in total

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