ggKbase home page

L3_102_000G1_scaffold_227

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000G1_scaffold_227_1
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..190
DNA (189bp) protein (63aa)
30S ribosomal protein S21 n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G1H5_9FIRM
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
SSU ribosomal protein S21P
L3_102_000G1_scaffold_227_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

490..5049
DNA (4560bp) protein (1520aa)
F5/8 type C domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS37_9CLOT
F5/8 type C domain protein {ECO:0000313|EMBL:EEA81107.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
nanA; sialidase NanA-like
L3_102_000G1_scaffold_227_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5239..6294
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS36_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81106.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
PpiC-type peptidyl-prolyl cis-trans isomerase
L3_102_000G1_scaffold_227_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6316..8988
DNA (2673bp) protein (891aa)
F5/8 type C domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS35_9CLOT
F5/8 type C domain protein {ECO:0000313|EMBL:EEA81105.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_102_000G1_scaffold_227_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9005..12787
DNA (3783bp) protein (1261aa)
Sortase B cell surface sorting signal n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS34_9CLOT
Sortase B cell surface sorting signal {ECO:0000313|EMBL:EEA81104.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_102_000G1_scaffold_227_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12944..13537
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS33_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81103.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_102_000G1_scaffold_227_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13633..14838
DNA (1206bp) protein (402aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS32_9CLOT
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EEA81102.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_102_000G1_scaffold_227_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14946..15818
DNA (873bp) protein (291aa)
Ser/Thr phosphatase family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS31_9CLOT
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EEA81101.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted phosphohydrolases
L3_102_000G1_scaffold_227_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15815..16780
DNA (966bp) protein (322aa)
Cyclic pyranopterin phosphate synthase {ECO:0000256|SAAS:SAAS00064088}; EC=4.1.99.18 {ECO:0000256|SAAS:SAAS00064088};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFT3_9CLOT
moaA; molybdenum cofactor biosynthesis protein A
L3_102_000G1_scaffold_227_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16798..17595
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QMK2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23197.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
molybdenum ABC transporter, periplasmic molybdate-binding protein
L3_102_000G1_scaffold_227_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17599..18270
DNA (672bp) protein (224aa)
Molybdate ABC transporter, permease protein n=2 Tax=Clostridium RepID=B6FS28_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23196.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
molybdate ABC transporter permease
L3_102_000G1_scaffold_227_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18272..19306
DNA (1035bp) protein (345aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FS27_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEA81097.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
sulfate/molybdate ABC transporter ATPase
L3_102_000G1_scaffold_227_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19395..20180
DNA (786bp) protein (262aa)
Segregation and condensation protein A n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS26_9CLOT
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
scpA; chromosome segregation and condensation protein ScpA
L3_102_000G1_scaffold_227_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20170..20739
DNA (570bp) protein (190aa)
Segregation and condensation protein B n=2 Tax=Clostridium RepID=B6FS25_9CLOT
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
segregation and condensation protein B
L3_102_000G1_scaffold_227_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20801..21991
DNA (1191bp) protein (397aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QMJ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23192.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_102_000G1_scaffold_227_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22096..24087
DNA (1992bp) protein (664aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Isopropylmalate/homocitrate/citramalate synthases (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS23_9CLOT
L3_102_000G1_scaffold_227_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24150..25523)
DNA (1374bp) protein (458aa)
Amino acid/peptide transporter n=2 Tax=Clostridium RepID=B6FS22_9CLOT
Amino acid/peptide transporter {ECO:0000313|EMBL:EEA81092.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
proton-dependent oligopeptide transporter
L3_102_000G1_scaffold_227_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25551..27338)
DNA (1788bp) protein (596aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PQZ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23189.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
peptidase M24
L3_102_000G1_scaffold_227_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27566..29002
DNA (1437bp) protein (479aa)
Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) (EC:6.4.1.3)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFS4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23188.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_102_000G1_scaffold_227_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29017..29781
DNA (765bp) protein (255aa)
Oxaloacetate decarboxylase gamma chain {ECO:0000256|RuleBase:RU004278}; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004278};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Oxaloacetate decarboxylase gamma chain n=2 Tax=Clostridium RepID=R6QMJ3_9CLOT
sodium pump decarboxylases, gamma subunit
L3_102_000G1_scaffold_227_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29809..30177
DNA (369bp) protein (123aa)
Biotin-requiring enzyme n=2 Tax=Clostridium RepID=B6FS17_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23186.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Biotin carboxyl carrier protein
L3_102_000G1_scaffold_227_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30189..31340
DNA (1152bp) protein (384aa)
sodium ion-translocating decarboxylase, beta subunit (EC:4.1.1.3 4.1.1.70)
Sodium ion-translocating decarboxylase, beta subunit n=2 Tax=Clostridium RepID=B6FS16_9CLOT
Sodium ion-translocating decarboxylase, beta subunit {ECO:0000313|EMBL:EEA81182.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_102_000G1_scaffold_227_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31358..32767
DNA (1410bp) protein (470aa)
Pyruvate/oxaloacetate carboxyltransferase (EC:4.1.1.3)
Conserved carboxylase domain protein n=2 Tax=Clostridium RepID=B6FS15_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23184.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_102_000G1_scaffold_227_24
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32825..33016)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS14_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOS24310.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
hypothetical protein
L3_102_000G1_scaffold_227_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33240..33809
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QMI8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23182.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
alkyl hydroperoxide reductase
L3_102_000G1_scaffold_227_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33821..34489
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PXJ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23181.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_000G1_scaffold_227_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34688..35224
DNA (537bp) protein (179aa)
Transcriptional regulator, TetR family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS10_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEA81176.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Transcriptional regulator
L3_102_000G1_scaffold_227_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35357..36853
DNA (1497bp) protein (499aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS09_9CLOT
L3_102_000G1_scaffold_227_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36885..37595
DNA (711bp) protein (237aa)
MIP family channel protein n=2 Tax=Clostridium RepID=B6FS08_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23178.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
MIP family channel proteins
L3_102_000G1_scaffold_227_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37726..39162
DNA (1437bp) protein (479aa)
FAD dependent oxidoreductase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FS07_9CLOT
FAD dependent oxidoreductase {ECO:0000313|EMBL:EEA81173.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted dehydrogenase
Displaying items 1-30 of 89 in total

View Taxonomy