ggKbase home page

L3_102_000G1_scaffold_235

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000G1_scaffold_235_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(162..554)
DNA (393bp) protein (131aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7G8X6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56752.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_235_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(673..1581)
DNA (909bp) protein (303aa)
Galactose mutarotase and related enzymes n=2 Tax=Roseburia intestinalis RepID=D4KUY4_9FIRM
Galactose mutarotase and related enzymes
Galactose mutarotase and related enzymes {ECO:0000313|EMBL:CBL11174.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_000G1_scaffold_235_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1672..2325)
DNA (654bp) protein (218aa)
Channel protein, hemolysin III family n=3 Tax=Roseburia RepID=D4KUY3_9FIRM
channel protein, hemolysin III family
Channel protein, hemolysin III family {ECO:0000313|EMBL:CBL11173.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_000G1_scaffold_235_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2590..3981)
DNA (1392bp) protein (464aa)
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Asparagine--tRNA ligase n=3 Tax=Roseburia RepID=D4KUY2_9FIRM
L3_102_000G1_scaffold_235_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4036..5319)
DNA (1284bp) protein (428aa)
FKBP-type peptidyl-prolyl cis-trans isomerase (Trigger factor) n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUY1_9FIRM
FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)
Trigger factor {ECO:0000256|RuleBase:RU003914}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_000G1_scaffold_235_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5460..5753
DNA (294bp) protein (98aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7G8Y4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56759.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_235_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5773..6519)
DNA (747bp) protein (249aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6B0N4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56760.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_235_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6547..7830)
DNA (1284bp) protein (428aa)
Diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=4 Tax=Roseburia RepID=D4KKM4_9FIRM
Diaminopimelate decarboxylase {ECO:0000313|EMBL:CDA56761.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_235_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7848..8180)
DNA (333bp) protein (111aa)
Predicted branched-chain amino acid permeases (Azaleucine resistance) n=3 Tax=Roseburia RepID=D4KKM3_9FIRM
Predicted branched-chain amino acid permeases (azaleucine resistance)
Predicted branched-chain amino acid permeases (Azaleucine resistance) {ECO:0000313|EMBL:CDA56762.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_235_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8170..8931)
DNA (762bp) protein (254aa)
Branched-chain amino acid transport protein AzlC n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AY26_9FIRM
Branched-chain amino acid transport protein AzlC {ECO:0000313|EMBL:CDA56763.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted branched-chain amino acid permease (azaleucine resistance)
L3_102_000G1_scaffold_235_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9095..10189
DNA (1095bp) protein (365aa)
Putative ATP synthase F1, delta subunit n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8Z0_9FIRM
Putative ATP synthase F1, delta subunit {ECO:0000313|EMBL:EEV01714.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
L3_102_000G1_scaffold_235_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10293..10748)
DNA (456bp) protein (152aa)
Transcriptional regulator, MarR family n=2 Tax=Roseburia RepID=C7G8Z1_9FIRM
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EEV01715.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Transcriptional regulators
L3_102_000G1_scaffold_235_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11372..12283)
DNA (912bp) protein (304aa)
Ribosomal protein S1 n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKL9_9FIRM
Ribosomal protein S1
Ribosomal protein S1 {ECO:0000313|EMBL:CBL07421.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_102_000G1_scaffold_235_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12550..14844)
DNA (2295bp) protein (765aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Histidine kinase A domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8Z3_9FIRM
sensor histidine kinase
L3_102_000G1_scaffold_235_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14816..15523)
DNA (708bp) protein (236aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Roseburia RepID=D4KKL8_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL11162.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_000G1_scaffold_235_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15874..16167
DNA (294bp) protein (98aa)
Predicted membrane protein n=4 Tax=Roseburia RepID=D4KUX0_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CDA56261.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_235_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16293..18752)
DNA (2460bp) protein (820aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587, ECO:0000313|EMBL:CBL11159.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUW9_9FIRM
L3_102_000G1_scaffold_235_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18753..21944)
DNA (3192bp) protein (1064aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUW8_9FIRM
L3_102_000G1_scaffold_235_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22439..23422)
DNA (984bp) protein (328aa)
Exopolyphosphatase-related proteins n=2 Tax=Roseburia intestinalis RepID=D4KUW7_9FIRM
Exopolyphosphatase-related proteins
Exopolyphosphatase-related proteins {ECO:0000313|EMBL:CBL11157.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_000G1_scaffold_235_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23419..24072)
DNA (654bp) protein (218aa)
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=2 Tax=Roseburia RepID=D4KKL3_9FIRM
Haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CDA56239.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_235_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24129..25631)
DNA (1503bp) protein (501aa)
Carboxypeptidase Taq (M32) metallopeptidase {ECO:0000313|EMBL:EEV01706.1}; EC=3.4.17.19 {ECO:0000313|EMBL:EEV01706.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Zn-dependent carboxypeptidase (EC:3.4.17.19)
Carboxypeptidase Taq (M32) metallopeptidase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G902_9FIRM
L3_102_000G1_scaffold_235_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25697..25828)
DNA (132bp) protein (44aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUW3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11153.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_000G1_scaffold_235_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25850..26914)
DNA (1065bp) protein (355aa)
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched chain amino acid aminotransferase apoenzyme {ECO:0000313|EMBL:CBL11152.1}; EC=2.6.1.42 {ECO:0000313|EMBL:CBL11152.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Branched chain amino acid aminotransferase apoenzyme n=2 Tax=Roseburia RepID=D4KUW2_9FIRM
L3_102_000G1_scaffold_235_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27102..27641)
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUW0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11150.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_000G1_scaffold_235_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27936..28445
DNA (510bp) protein (170aa)
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99972.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L3_102_000G1_scaffold_235_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28521..29477)
DNA (957bp) protein (319aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7GDU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56232.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Putative transposase, YhgA-like.
L3_102_000G1_scaffold_235_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29854..30369
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKK6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL07408.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_102_000G1_scaffold_235_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30646..31215)
DNA (570bp) protein (190aa)
GtrA-like protein n=4 Tax=Roseburia RepID=D4KKK5_9FIRM
GtrA-like protein.
GtrA-like protein {ECO:0000313|EMBL:CBL07407.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_102_000G1_scaffold_235_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31263..34160)
DNA (2898bp) protein (966aa)
Beta-glucosidase-related glycosidases {ECO:0000313|EMBL:CBL07406.1}; EC=3.2.1.21 {ECO:0000313|EMBL:CBL07406.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Beta-glucosidase-related glycosidases n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKK4_9FIRM
L3_102_000G1_scaffold_235_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34443..36131)
DNA (1689bp) protein (563aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AXF9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56563.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
Displaying items 1-30 of 75 in total

View Taxonomy