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L3_102_000G1_scaffold_237

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000G1_scaffold_237_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

140..358
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BTB9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL08805.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_102_000G1_scaffold_237_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(441..1241)
DNA (801bp) protein (267aa)
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Shikimate kinase n=3 Tax=Roseburia RepID=D4KPK2_9FIRM
L3_102_000G1_scaffold_237_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1435..2466)
DNA (1032bp) protein (344aa)
C4-dicarboxylate transport system n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AX54_9FIRM
C4-dicarboxylate transport system {ECO:0000313|EMBL:CDA56488.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_102_000G1_scaffold_237_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2480..3772)
DNA (1293bp) protein (431aa)
TRAP dicarboxylate transporter DctM subunit n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BTB4_9FIRM
TRAP dicarboxylate transporter DctM subunit {ECO:0000313|EMBL:CDA56487.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
TRAP transporter, DctM subunit
L3_102_000G1_scaffold_237_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3773..4378)
DNA (606bp) protein (202aa)
TRAP-type C4-dicarboxylate transport system small permease component n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BBI3_9FIRM
TRAP-type C4-dicarboxylate transport system small permease component {ECO:0000313|EMBL:CDA56486.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
TRAP-type C4-dicarboxylate transport system, small permease component
L3_102_000G1_scaffold_237_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4581..5345)
DNA (765bp) protein (255aa)
3-dehydroquinate dehydratase, type I (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000313|EMBL:CBL08801.1};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
3-dehydroquinate dehydratase n=2 Tax=Roseburia intestinalis RepID=D4KPJ9_9FIRM
L3_102_000G1_scaffold_237_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5383..6597)
DNA (1215bp) protein (405aa)
Major Facilitator Superfamily n=4 Tax=Roseburia RepID=D4KPJ8_9FIRM
Major Facilitator Superfamily.
Major Facilitator Superfamily {ECO:0000313|EMBL:CDA56484.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_237_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6676..7551)
DNA (876bp) protein (292aa)
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Shikimate dehydrogenase n=3 Tax=Roseburia intestinalis RepID=D4KPJ7_9FIRM
L3_102_000G1_scaffold_237_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7806..8687
DNA (882bp) protein (294aa)
Transcriptional regulator, LysR family n=4 Tax=Roseburia RepID=D4KPJ6_9FIRM
transcriptional regulator, LysR family
Transcriptional regulator LysR family {ECO:0000313|EMBL:CDA56482.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_237_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8746..9627)
DNA (882bp) protein (294aa)
Transcriptional regulator, LysR family n=3 Tax=Roseburia intestinalis RepID=D4KPJ5_9FIRM
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CBL08797.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_102_000G1_scaffold_237_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9978..11978
DNA (2001bp) protein (667aa)
NADH:flavin oxidoreductases, Old Yellow Enzyme family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L376_9FIRM
NADH:flavin oxidoreductases, Old Yellow Enzyme family
NADH:flavin oxidoreductases, Old Yellow Enzyme family {ECO:0000313|EMBL:CBL14066.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_000G1_scaffold_237_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12344..13213)
DNA (870bp) protein (290aa)
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Shikimate dehydrogenase n=3 Tax=Roseburia intestinalis RepID=D4KPJ3_9FIRM
L3_102_000G1_scaffold_237_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14475..14912
DNA (438bp) protein (146aa)
Acetyltransferases n=3 Tax=Roseburia intestinalis RepID=D4KPJ2_9FIRM
Acetyltransferases
Acetyltransferases {ECO:0000313|EMBL:CBL08794.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_102_000G1_scaffold_237_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15082..17064)
DNA (1983bp) protein (661aa)
Myosin-crossreactive antigen n=2 Tax=Roseburia RepID=D4KPJ1_9FIRM
Myosin-crossreactive antigen
Myosin-crossreactive antigen {ECO:0000313|EMBL:CBL08793.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_102_000G1_scaffold_237_15
unknown

Not on your lists

comp(17174..17281)
DNA (108bp) protein (36aa)

This feature has no annotations

L3_102_000G1_scaffold_237_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17278..17838)
DNA (561bp) protein (187aa)
Transcriptional regulator n=3 Tax=Roseburia RepID=D4KPJ0_9FIRM
transcriptional regulator
Putative dihydroxyacetone kinase regulator {ECO:0000313|EMBL:EEV01790.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_102_000G1_scaffold_237_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18179..19693)
DNA (1515bp) protein (505aa)
Alpha-L-arabinofuranosidase (EC:3.2.1.55)
Alpha-L-arabinofuranosidase {ECO:0000313|EMBL:CBL08791.1}; EC=3.2.1.55 {ECO:0000313|EMBL:CBL08791.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Alpha-L-arabinofuranosidase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KPI9_9FIRM
L3_102_000G1_scaffold_237_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19721..20584)
DNA (864bp) protein (288aa)
ABC transporter, permease protein n=2 Tax=Roseburia RepID=C7G8R4_9FIRM
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L-arabinose transport system permease protein AraQ {ECO:0000313|EMBL:CDA53903.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_237_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20586..21479)
DNA (894bp) protein (298aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) n=3 Tax=Roseburia RepID=D4L367_9FIRM
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA53902.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_237_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21563..22960)
DNA (1398bp) protein (466aa)
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B4L2_9FIRM
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA53901.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_237_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23047..24999)
DNA (1953bp) protein (651aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L364_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL14054.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_000G1_scaffold_237_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25504..26541)
DNA (1038bp) protein (346aa)
Transcriptional regulator, LacI family n=4 Tax=Roseburia RepID=D4KPI3_9FIRM
transcriptional regulator, LacI family
Transcriptional regulator LacI family {ECO:0000313|EMBL:CDA53887.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_237_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26655..27794
DNA (1140bp) protein (380aa)
Monogalactosyldiacylglycerol synthase (EC:2.4.1.46)
Monogalactosyldiacylglycerol synthase {ECO:0000313|EMBL:CBL08784.1}; EC=2.4.1.46 {ECO:0000313|EMBL:CBL08784.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Monogalactosyldiacylglycerol synthase n=2 Tax=Roseburia intestinalis RepID=D4KPI2_9FIRM
L3_102_000G1_scaffold_237_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27791..28411
DNA (621bp) protein (207aa)
Putative acyl-phosphate glycerol 3-phosphate acyltransferase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8Q6_9FIRM
Putative acyl-phosphate glycerol 3-phosphate acyltransferase {ECO:0000313|EMBL:EEV01780.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Predicted membrane protein
L3_102_000G1_scaffold_237_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28415..29290)
DNA (876bp) protein (292aa)
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974, ECO:0000313|EMBL:CBL14049.1};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Methionine aminopeptidase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L359_9FIRM
L3_102_000G1_scaffold_237_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29281..29718)
DNA (438bp) protein (146aa)
Uncharacterized conserved protein n=4 Tax=Roseburia RepID=D4KPH9_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CDA53880.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_000G1_scaffold_237_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29830..31161)
DNA (1332bp) protein (444aa)
Cell wall-associated hydrolases (Invasion-associated proteins) n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L357_9FIRM
Cell wall-associated hydrolases (invasion-associated proteins)
Cell wall-associated hydrolases (Invasion-associated proteins) {ECO:0000313|EMBL:CBL14047.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_000G1_scaffold_237_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31326..32885)
DNA (1560bp) protein (520aa)
LysM domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L356_9FIRM
LysM domain.
LysM domain {ECO:0000313|EMBL:CBL14046.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_000G1_scaffold_237_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32950..33192)
DNA (243bp) protein (81aa)
Uncharacterized protein conserved in bacteria n=4 Tax=Roseburia RepID=D4KPH7_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL14045.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_000G1_scaffold_237_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33338..33754)
DNA (417bp) protein (139aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6B4I0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA53876.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Displaying items 1-30 of 87 in total

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