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L3_102_000G1_scaffold_290

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000G1_scaffold_290_1
unknown

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2..283
DNA (282bp) protein (94aa)

This feature has no annotations

L3_102_000G1_scaffold_290_2
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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599..1351
DNA (753bp) protein (251aa)
nitrogenase (EC:1.18.6.1)
Nitrogenase iron protein n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6X8P9_9FIRM
Nitrogenase iron protein {ECO:0000313|EMBL:CDD12711.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
L3_102_000G1_scaffold_290_3
Phascolarctobacterium sp. CAG:266, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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1354..2370
DNA (1017bp) protein (339aa)
ABC transporter n=1 Tax=Phascolarctobacterium sp. CAG:266 RepID=R6HKM1_9FIRM
ABC transporter {ECO:0000313|EMBL:CDB34629.1}; TaxID=1262915 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:266.;"
ABC transporter
L3_102_000G1_scaffold_290_4
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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2387..3388
DNA (1002bp) protein (334aa)
Ferrichrome transport system permease fhuG n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6I6J1_9FIRM
Ferrichrome transport system permease fhuG {ECO:0000313|EMBL:CDB45818.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
ferrichrome transport system permease fhuG
L3_102_000G1_scaffold_290_5
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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3416..4201
DNA (786bp) protein (262aa)
ABC transporter (EC:3.6.3.34)
ABC transporter n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6IGY0_9FIRM
ABC transporter {ECO:0000313|EMBL:CDB45819.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
L3_102_000G1_scaffold_290_6
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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4259..5557
DNA (1299bp) protein (433aa)
Oxidoreductase nitrogenase component 1 n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6I916_9FIRM
Oxidoreductase nitrogenase component 1 {ECO:0000313|EMBL:CDB45820.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
nifE1; nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
L3_102_000G1_scaffold_290_7
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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5550..6797
DNA (1248bp) protein (416aa)
Oxidoreductase/nitrogenase component 1 n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6IKC2_9FIRM
Oxidoreductase/nitrogenase component 1 {ECO:0000313|EMBL:CDB45821.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
nifE2; nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
L3_102_000G1_scaffold_290_8
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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6804..7316
DNA (513bp) protein (171aa)
Flavodoxin family protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AUF2_CLOA9
Flavodoxin {ECO:0000313|EMBL:KGG80911.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
flavodoxin family protein
L3_102_000G1_scaffold_290_9
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7361..7615)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KK04_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY67155.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
hypothetical protein
L3_102_000G1_scaffold_290_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7802..9073
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H8F0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJF41900.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_102_000G1_scaffold_290_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9164..10459)
DNA (1296bp) protein (432aa)
MiaB-like protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0X004_9CLOT
MiaB-like protein {ECO:0000313|EMBL:EJF41906.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
radical SAM methylthiotransferase, MiaB/RimO family
L3_102_000G1_scaffold_290_12
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10615..10875
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:86 RepID=R5DMY3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81610.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
phosphoryl transfer system hpr
L3_102_000G1_scaffold_290_13
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10908..12809)
DNA (1902bp) protein (634aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0NBB6_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EJF41927.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_102_000G1_scaffold_290_14
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12899..13450)
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6N546_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC03454.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_102_000G1_scaffold_290_15
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13472..14272)
DNA (801bp) protein (267aa)
Metal-dependent hydrolases of the beta-lactamase superfamily III n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PYN5_9FIRM
Metal-dependent hydrolases of the beta-lactamase superfamily III {ECO:0000313|EMBL:CDC29518.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Metal-dependent hydrolases of the beta-lactamase superfamily III
L3_102_000G1_scaffold_290_16
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14467..15324
DNA (858bp) protein (286aa)
AP endonuclease, family 2 n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVU0_9CLOT
AP endonuclease, family 2 {ECO:0000313|EMBL:EDO61090.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
xylose isomerase domain-containing protein TIM barrel
L3_102_000G1_scaffold_290_17
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15395..15850
DNA (456bp) protein (152aa)
Transcriptional repressor NrdR n=1 Tax=Clostridium sp. MSTE9 RepID=J0N125_9CLOT
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
transcriptional regulator NrdR
L3_102_000G1_scaffold_290_18
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15897..16676)
DNA (780bp) protein (260aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
Type III pantothenate kinase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R3H0_CLOSW
transcriptional activator, Baf family
L3_102_000G1_scaffold_290_19
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16693..17523)
DNA (831bp) protein (277aa)
Putative membrane protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6DE56_9CLOT
Putative membrane protein {ECO:0000313|EMBL:CDA76107.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L3_102_000G1_scaffold_290_20
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17807..19009
DNA (1203bp) protein (401aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic (EC:6.3.2.5)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase prokaryotic n=1 Tax=Clostridium sp. CAG:58 RepID=R6RSV1_9CLOT
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase prokaryotic {ECO:0000313|EMBL:CDC48414.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
L3_102_000G1_scaffold_290_21
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19131..19511)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003731633
PF14276 domain protein {ECO:0000313|EMBL:EJF40468.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_102_000G1_scaffold_290_22
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19508..20191)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R3Y1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC39884.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Predicted membrane protein
L3_102_000G1_scaffold_290_23
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20436..20675
DNA (240bp) protein (80aa)
Predicted transcriptional regulators n=1 Tax=Eubacterium eligens CAG:72 RepID=R6A2N1_9FIRM
Predicted transcriptional regulators {ECO:0000313|EMBL:CDA40926.1}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
hypothetical protein
L3_102_000G1_scaffold_290_24
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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20706..20963
DNA (258bp) protein (86aa)
XRE family transcriptional regulator n=1 Tax=Alicyclobacillus acidocaldarius (strain Tc-4-1) RepID=F8IHE0_ALIAT
XRE family transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:AEJ44413.1}; TaxID=1048834 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius (strain Tc-4-1) (Bacillus; acidocaldarius).;"
L3_102_000G1_scaffold_290_25
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21087..22571
DNA (1485bp) protein (495aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VTU7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO61593.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
GerA spore germination protein
L3_102_000G1_scaffold_290_26
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22651..23715
DNA (1065bp) protein (355aa)
Spore germination protein (Amino acid permease) n=1 Tax=Clostridium sp. CAG:557 RepID=R6GHQ9_9CLOT
Spore germination protein (Amino acid permease) {ECO:0000313|EMBL:CDB23935.1}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
putative membrane protein
L3_102_000G1_scaffold_290_27
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23693..24811
DNA (1119bp) protein (373aa)
Germination protein Ger(X)C family n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A822_9CLOT
Germination protein Ger(X)C family {ECO:0000313|EMBL:CCX38848.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_102_000G1_scaffold_290_28
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24795..25415)
DNA (621bp) protein (207aa)
PF08876 domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N101_9CLOT
PF08876 domain protein {ECO:0000313|EMBL:EJF40409.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L3_102_000G1_scaffold_290_29
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25638..28094
DNA (2457bp) protein (819aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ATP-dependent DNA helicase PcrA (EC:3.6.1.-)
Putative ATP-dependent DNA helicase PcrA n=1 Tax=Clostridium sp. MSTE9 RepID=J1H4R8_9CLOT
L3_102_000G1_scaffold_290_30
unknown

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28126..28272
DNA (147bp) protein (49aa)

This feature has no annotations

Displaying items 1-30 of 71 in total

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