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L3_102_000G1_scaffold_299

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000G1_scaffold_299_1
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..146)
DNA (144bp) protein (48aa)
50S ribosomal protein L28 n=4 Tax=Bifidobacterium RepID=RL28_BIFAA
50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
L3_102_000G1_scaffold_299_2
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(443..2443)
DNA (2001bp) protein (667aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P328_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC15114.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
hypothetical protein
L3_102_000G1_scaffold_299_3
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2828..4156
DNA (1329bp) protein (443aa)
Transporter, major facilitator family protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQX6_9BIFI
Transporter, major facilitator family protein {ECO:0000313|EMBL:EEG71889.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
MFS transporter
L3_102_000G1_scaffold_299_4
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4453..5187)
DNA (735bp) protein (245aa)
FCD domain protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQX8_9BIFI
Transcriptional regulator {ECO:0000313|EMBL:KEF29013.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
transcriptional regulator
L3_102_000G1_scaffold_299_5
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5464..6015
DNA (552bp) protein (184aa)
Putative shikimate kinase n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQX9_9BIFI
Carbohydrate kinase {ECO:0000313|EMBL:BAR02887.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
gluconate kinase
L3_102_000G1_scaffold_299_6
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6433..7623)
DNA (1191bp) protein (397aa)
Aminotransferase, class I/II n=2 Tax=Bifidobacterium RepID=C0BQY4_9BIFI
Aspartate aminotransferase {ECO:0000313|EMBL:KEF29014.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
aspartate aminotransferase
L3_102_000G1_scaffold_299_7
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7742..8416)
DNA (675bp) protein (225aa)
Transcriptional regulator, TetR family n=2 Tax=Bifidobacterium RepID=C0BQY5_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC15109.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
AcrR family transcriptional regulator
L3_102_000G1_scaffold_299_8
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8586..9791)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQY6_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEF29016.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
L3_102_000G1_scaffold_299_9
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9791..11017)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQY7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEG71900.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
hypothetical protein
L3_102_000G1_scaffold_299_10
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11243..12028
DNA (786bp) protein (262aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=2 Tax=Bifidobacterium RepID=C0BQY8_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:BAR02880.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
transporter
L3_102_000G1_scaffold_299_11
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12119..13234)
DNA (1116bp) protein (372aa)
CAAX amino terminal protease family protein n=2 Tax=Bifidobacterium RepID=C0BQY9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC15105.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
CAAX protease
L3_102_000G1_scaffold_299_12
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13399..14580)
DNA (1182bp) protein (394aa)
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium RepID=C0BQZ0_9BIFI
ABC transporter ATP-binding component {ECO:0000313|EMBL:BAR02877.1}; ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEG71903.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
ABC transporter ATP-binding protein
L3_102_000G1_scaffold_299_13
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14577..15440)
DNA (864bp) protein (288aa)
ABC transporter, permease protein n=2 Tax=Bifidobacterium RepID=C0BQZ1_9BIFI
ABC transporter permease {ECO:0000313|EMBL:KEF29021.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
ABC transporter permease
L3_102_000G1_scaffold_299_14
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15431..16384)
DNA (954bp) protein (318aa)
ABC transporter, permease protein n=2 Tax=Bifidobacterium RepID=C0BQZ2_9BIFI
ABC transporter permease {ECO:0000313|EMBL:KEF29022.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
ABC transporter permease
L3_102_000G1_scaffold_299_15
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16603..17766)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P989_9BIFI
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEF29023.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
ABC transporter substrate-binding protein
L3_102_000G1_scaffold_299_16
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18006..19142)
DNA (1137bp) protein (379aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
D-alanine--D-alanine ligase n=2 Tax=Bifidobacterium RepID=C0BQZ4_9BIFI
D-alanine--D-alanine ligase
L3_102_000G1_scaffold_299_17
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19629..20627)
DNA (999bp) protein (333aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQZ5_9BIFI
glycerol-3-phosphate acyltransferase
L3_102_000G1_scaffold_299_18
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20832..21722)
DNA (891bp) protein (297aa)
Acyltransferase n=2 Tax=Bifidobacterium RepID=C0BQZ6_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:BAR02871.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
acyl-phosphate glycerol 3-phosphate acyltransferase
L3_102_000G1_scaffold_299_19
unknown

Not on your lists

comp(21918..22055)
DNA (138bp) protein (46aa)

This feature has no annotations

L3_102_000G1_scaffold_299_20
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22212..23537)
DNA (1326bp) protein (442aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|SAAS:SAAS00085344};; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=2 Tax=Bifidobacterium RepID=C0BQZ8_9BIFI
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
L3_102_000G1_scaffold_299_21
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23960..25138)
DNA (1179bp) protein (393aa)
Dihydroorotate oxidase n=2 Tax=Bifidobacterium RepID=C0BQZ9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC16471.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
diguanylate cyclase
L3_102_000G1_scaffold_299_22
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25581..26318)
DNA (738bp) protein (246aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
3-isopropylmalate dehydratase small subunit n=2 Tax=Bifidobacterium RepID=R6Q3F3_9BIFI
isopropylmalate isomerase
L3_102_000G1_scaffold_299_23
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26351..27754)
DNA (1404bp) protein (468aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
isopropylmalate isomerase (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BR02_9BIFI
L3_102_000G1_scaffold_299_24
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28131..28925
DNA (795bp) protein (265aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6NX49_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC16698.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
IclR family transcriptional regulator
L3_102_000G1_scaffold_299_25
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29046..30569)
DNA (1524bp) protein (508aa)
Ser/Thr phosphatase family protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BR05_9BIFI
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EEG71918.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
hypothetical protein
L3_102_000G1_scaffold_299_26
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31051..32616)
DNA (1566bp) protein (522aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
Glutamate--tRNA ligase n=2 Tax=Bifidobacterium RepID=R6Q417_9BIFI
glutamyl-tRNA synthetase
L3_102_000G1_scaffold_299_27
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32640..32888
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BR07_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEG71920.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
L3_102_000G1_scaffold_299_28
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32893..34206
DNA (1314bp) protein (438aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BR08_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC16703.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
hypothetical protein
L3_102_000G1_scaffold_299_29
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34362..35336)
DNA (975bp) protein (325aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BR09_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC16704.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
hypothetical protein
L3_102_000G1_scaffold_299_30
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35557..36216)
DNA (660bp) protein (220aa)
Phosphoglycerate mutase family protein n=2 Tax=Bifidobacterium RepID=C0BR10_9BIFI
Phosphoglycerate mutase {ECO:0000313|EMBL:KEF29036.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
phosphoglycerate mutase
Displaying items 1-30 of 98 in total

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