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L3_102_000M1_scaffold_277

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Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_277_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

278..1000
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1D0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67283.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_102_000M1_scaffold_277_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1078..1947
DNA (870bp) protein (290aa)
Integral membrane protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H932_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05753.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_102_000M1_scaffold_277_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2109..4550
DNA (2442bp) protein (814aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THC7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO05754.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein
L3_102_000M1_scaffold_277_4
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4572..5111
DNA (540bp) protein (180aa)
hypothetical protein (EC:3.6.1.-)
Hydrolase NUDIX family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8Z9_9FIRM
Hydrolase NUDIX family {ECO:0000313|EMBL:CDC67287.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_102_000M1_scaffold_277_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5263..8832)
DNA (3570bp) protein (1190aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159, ECO:0000313|EMBL:CCO05756.1}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159, ECO:0000313|EMBL:CCO05756.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
nifJ; Pyruvate-flavodoxin oxidoreductase (EC:1.2.7.-)
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1D7_9FIRM
L3_102_000M1_scaffold_277_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9172..10086)
DNA (915bp) protein (305aa)
ParB-like partition protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC69_9FIRM
parB4; ParB-like partition protein
ParB-like partition protein {ECO:0000313|EMBL:CCO05757.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_102_000M1_scaffold_277_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10144..10935)
DNA (792bp) protein (264aa)
Sporulation initiation inhibitor protein Soj n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4Z9_9FIRM
parA4; partitioning protein of the MinD/ParA family
Partitioning protein of the MinD/ParA family {ECO:0000313|EMBL:CCO05758.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_102_000M1_scaffold_277_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11221..12087
DNA (867bp) protein (289aa)
ParB-like partition protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THD4_9FIRM
parB5; ParB-like partition protein
ParB-like partition protein {ECO:0000313|EMBL:CCO05759.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_102_000M1_scaffold_277_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12142..13491)
DNA (1350bp) protein (450aa)
SCP-like protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U902_9FIRM
SCP-like protein {ECO:0000313|EMBL:CDC67292.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_102_000M1_scaffold_277_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13573..14502)
DNA (930bp) protein (310aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1E3_9FIRM
hypothetical protein
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CDC67293.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_102_000M1_scaffold_277_11
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14728..16104
DNA (1377bp) protein (459aa)
Membrane bound O-acyl transferase MBOAT family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC73_9FIRM
Membrane bound O-acyl transferase MBOAT family protein {ECO:0000313|EMBL:CDC67294.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Putative alginate O-acetyltransferase
L3_102_000M1_scaffold_277_12
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16121..16894
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T503_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67295.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_102_000M1_scaffold_277_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16887..17840
DNA (954bp) protein (318aa)
Radical SAM protein TIGR01212 family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THE0_9FIRM
Radical SAM protein TIGR01212 family {ECO:0000313|EMBL:CDC67296.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_102_000M1_scaffold_277_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17853..19223
DNA (1371bp) protein (457aa)
trmE; tRNA modification GTPase TrmE (EC:3.6.-.-)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379, ECO:0000313|EMBL:CCO05765.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
tRNA modification GTPase MnmE n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U908_9FIRM
L3_102_000M1_scaffold_277_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19260..21143
DNA (1884bp) protein (628aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1E9_9FIRM
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
L3_102_000M1_scaffold_277_16
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21145..21864
DNA (720bp) protein (240aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC76_9FIRM
methyltransferase GidB
L3_102_000M1_scaffold_277_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21933..22829)
DNA (897bp) protein (299aa)
R3H domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T508_9FIRM
R3H domain protein {ECO:0000313|EMBL:CDC67300.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
jag; RNA binding protein Jag
L3_102_000M1_scaffold_277_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22872..24209)
DNA (1338bp) protein (446aa)
Putative stage III sporulation protein J n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THE7_9FIRM
Putative stage III sporulation protein J {ECO:0000313|EMBL:CDC67301.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_102_000M1_scaffold_277_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24525..24899)
DNA (375bp) protein (125aa)
rnpA; Ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Ribonuclease P protein component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1F4_9FIRM
L3_102_000M1_scaffold_277_20
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25127..25261)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC79_9FIRM
rpmH; ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_102_000M1_scaffold_277_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25799..27160
DNA (1362bp) protein (454aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T512_9FIRM
dnaA; Chromosomal replication initiator protein DnaA
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000313|EMBL:CCO03741.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_102_000M1_scaffold_277_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27553..28713
DNA (1161bp) protein (387aa)
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
DNA polymerase III subunit beta n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THF4_9FIRM
L3_102_000M1_scaffold_277_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28718..28942
DNA (225bp) protein (75aa)
RNA-binding S4 domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U920_9FIRM
yaaA; Uncharacterized protein YaaA
Uncharacterized protein YaaA {ECO:0000313|EMBL:CCO03743.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_102_000M1_scaffold_277_24
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28944..30074
DNA (1131bp) protein (377aa)
DNA replication and repair protein RecF n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1G2_9FIRM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|SAAS:SAAS00122784}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
recF; DNA replication and repair protein RecF
L3_102_000M1_scaffold_277_25
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30074..30334
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC83_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03745.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_102_000M1_scaffold_277_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30391..32367
DNA (1977bp) protein (659aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T516_9FIRM
L3_102_000M1_scaffold_277_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32383..33072
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67311.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_102_000M1_scaffold_277_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


33128..35614
DNA (2487bp) protein (829aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U924_9FIRM
L3_102_000M1_scaffold_277_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35785..37068)
DNA (1284bp) protein (428aa)
serS; seryl-tRNA synthetase (EC:6.1.1.11)
Seryl-tRNA synthetase {ECO:0000313|EMBL:CCO03749.1}; EC=6.1.1.11 {ECO:0000313|EMBL:CCO03749.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Serine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1G7_9FIRM
L3_102_000M1_scaffold_277_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37384..38766
DNA (1383bp) protein (461aa)
Protein translocase subunit SecD n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC88_9FIRM
Export membrane protein SecD {ECO:0000313|EMBL:CDC67314.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
secD; Protein-export membrane protein SecD
Displaying items 1-30 of 100 in total

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