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L3_102_000M1_scaffold_538

Search features with annotation key words

Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_538_1
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..371
DNA (369bp) protein (123aa)
FeS cluster assembly scaffold protein NifU n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z4K7_9FIRM
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:CDD35826.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L3_102_000M1_scaffold_538_2
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(445..1278)
DNA (834bp) protein (278aa)
hisJ; histidinol phosphate phosphatase HisJ (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZZ94_9FIRM
Histidinol phosphate phosphatase HisJ {ECO:0000313|EMBL:CDD35827.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L3_102_000M1_scaffold_538_3
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1290..3044)
DNA (1755bp) protein (585aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YIQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35828.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Predicted RNA-binding protein homologous to eukaryotic snRNP
L3_102_000M1_scaffold_538_4
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3210..4088
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YWS1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35829.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
conserved hypothetical protein TIGR00255
L3_102_000M1_scaffold_538_5
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4110..4358
DNA (249bp) protein (83aa)
UPF0296 protein HMPREF0994_03098 n=1 Tax=Roseburia sp. CAG:309 RepID=R6YPP0_9FIRM
UPF0296 protein HMPREF0994_03098 {ECO:0000313|EMBL:CDD35830.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L3_102_000M1_scaffold_538_6
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4381..5004
DNA (624bp) protein (208aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Guanylate kinase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CA73_9CLOT
guanylate kinase
L3_102_000M1_scaffold_538_7
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5020..5709
DNA (690bp) protein (230aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
sipA; signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z4L3_9FIRM
L3_102_000M1_scaffold_538_8
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5776..6141
DNA (366bp) protein (122aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
DNA-directed RNA polymerase subunit omega n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZZA0_9FIRM
DNA-directed RNA polymerase subunit omega
L3_102_000M1_scaffold_538_9
unknown

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comp(6225..6389)
DNA (165bp) protein (55aa)

This feature has no annotations

L3_102_000M1_scaffold_538_10
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6550..6873
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YIR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35833.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
LysM domain-containing protein
L3_102_000M1_scaffold_538_11
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6991..9171
DNA (2181bp) protein (727aa)
Cell wall hydrolase/autolysin n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9R4_9CLOT
Cell wall hydrolase/autolysin {ECO:0000313|EMBL:CDD74826.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
cell wall hydrolase/autolysin
L3_102_000M1_scaffold_538_12
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9270..10337)
DNA (1068bp) protein (356aa)
Putative tyrosine recombinase XerC n=1 Tax=Clostridium sp. CAG:62 RepID=R7CA70_9CLOT
Putative tyrosine recombinase XerC {ECO:0000313|EMBL:CDD74825.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Site-specific recombinase XerD
L3_102_000M1_scaffold_538_13
unknown

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comp(10352..10543)
DNA (192bp) protein (64aa)

This feature has no annotations

L3_102_000M1_scaffold_538_14
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10545..10925)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z4L9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35836.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
CopY family transcriptional regulator
L3_102_000M1_scaffold_538_15
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11062..11985)
DNA (924bp) protein (308aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Pseudouridine synthase n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZZA5_9FIRM
RluA family pseudouridine synthase
L3_102_000M1_scaffold_538_16
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11992..12486)
DNA (495bp) protein (165aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAT0_9CLOT
L3_102_000M1_scaffold_538_17
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12519..13679)
DNA (1161bp) protein (387aa)
DivIVA family protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YJW9_9FIRM
DivIVA family protein {ECO:0000313|EMBL:CDD34185.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
DivIVA family protein
L3_102_000M1_scaffold_538_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13701..14210)
DNA (510bp) protein (170aa)
Cell division protein SepF n=1 Tax=Roseburia sp. CAG:309 RepID=R6YZY1_9FIRM
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L3_102_000M1_scaffold_538_19
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14237..14923)
DNA (687bp) protein (229aa)
Pyridoxal phosphate enzyme YggS family n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZUJ2_9FIRM
Pyridoxal phosphate enzyme YggS family {ECO:0000313|EMBL:CDD34187.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
pyridoxal phosphate enzyme, YggS family
L3_102_000M1_scaffold_538_20
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14947..16347)
DNA (1401bp) protein (467aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YDY7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34188.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L3_102_000M1_scaffold_538_21
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16451..16645
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YRW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34189.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L3_102_000M1_scaffold_538_22
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16650..17048)
DNA (399bp) protein (133aa)
Methylglyoxal synthase {ECO:0000256|SAAS:SAAS00089917}; EC=4.2.3.3 {ECO:0000256|SAAS:SAAS00089921};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Methylglyoxal synthase 1 n=1 Tax=Roseburia sp. CAG:309 RepID=R6YJX3_9FIRM
methylglyoxal synthase
L3_102_000M1_scaffold_538_23
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17070..18296)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:167 RepID=R5VK92_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ91108.1}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
cell cycle protein
L3_102_000M1_scaffold_538_24
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18315..18575)
DNA (261bp) protein (87aa)
Cell division topological specificity factor n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z2E9_9FIRM
Cell division topological specificity factor {ECO:0000256|HAMAP-Rule:MF_00262, ECO:0000256|SAAS:SAAS00085645}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
cell division topological specificity factor MinE
L3_102_000M1_scaffold_538_25
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18591..19382)
DNA (792bp) protein (264aa)
Site-determining protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZX67_9FIRM
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
septum site-determining protein MinD
L3_102_000M1_scaffold_538_26
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19460..20122)
DNA (663bp) protein (221aa)
Probable septum site-determining protein MinC n=1 Tax=Roseburia sp. CAG:309 RepID=R6YGF5_9FIRM
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
septum site-determining protein MinC
L3_102_000M1_scaffold_538_27
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20149..23043)
DNA (2895bp) protein (965aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YUI1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35064.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
penicillin-binding protein transpeptidase
L3_102_000M1_scaffold_538_28
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23048..23557)
DNA (510bp) protein (170aa)
Rod shape-determining protein MreD n=1 Tax=Roseburia sp. CAG:309 RepID=R6YML9_9FIRM
Rod shape-determining protein MreD {ECO:0000313|EMBL:CDD35065.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L3_102_000M1_scaffold_538_29
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23550..24428)
DNA (879bp) protein (293aa)
Cell shape-determining protein MreC n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z2F4_9FIRM
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
rod shape-determining protein MreC
L3_102_000M1_scaffold_538_30
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24447..25439)
DNA (993bp) protein (331aa)
Cell shape determining protein MreB/Mrl n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZX71_9FIRM
Cell shape determining protein MreB/Mrl {ECO:0000313|EMBL:CDD35067.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
rod shape-determining protein MreB
Displaying items 1-30 of 96 in total

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