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L3_102_000M1_scaffold_1424

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_1424_1
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..304
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LGN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET60233.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
Uncharacterized conserved protein (DUF2088).
L3_102_000M1_scaffold_1424_2
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(749..1354)
DNA (606bp) protein (202aa)
ATPase n=1 Tax=Clostridium sp. CAG:91 RepID=R6W2B2_9CLOT
ATPase {ECO:0000313|EMBL:CDD00884.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
ATPase (AAA+ superfamily)
L3_102_000M1_scaffold_1424_3
Caldicellulosiruptor obsidiansis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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2741..3301
DNA (561bp) protein (187aa)
uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR n=1 Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9TKE5_CALOO
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=608506 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47).;"
L3_102_000M1_scaffold_1424_4
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3305..4225
DNA (921bp) protein (307aa)
Aspartate carbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000255|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000255|HAMAP-Rule:MF_00001}; Short=ATCase {ECO:0000255|HAMAP-Rule:MF_00001};; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
Aspartate carbamoyltransferase n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=PYRB_CLOCE
pyrB; aspartate carbamoyltransferase catalytic subunit
L3_102_000M1_scaffold_1424_5
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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4222..5505
DNA (1284bp) protein (428aa)
dihydroorotase, multifunctional complex type (EC:3.5.2.3)
Dihydroorotase id=4312527 bin=GWC2_Pelobacter_58_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=GWC2_Pelobacteraceae_58_13_curated
L3_102_000M1_scaffold_1424_6
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5680..6618
DNA (939bp) protein (313aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
orotidine 5''''-phosphate decarboxylase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C3718E
L3_102_000M1_scaffold_1424_7
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6640..7410
DNA (771bp) protein (257aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Clostridium leptum DSM 753 RepID=A7VP86_9CLOT
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
L3_102_000M1_scaffold_1424_8
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7403..8314
DNA (912bp) protein (304aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Dihydroorotate dehydrogenase n=1 Tax=Clostridium leptum CAG:27 RepID=R6N238_9CLOT
dihydroorotate dehydrogenase
L3_102_000M1_scaffold_1424_9
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8869..9843)
DNA (975bp) protein (325aa)
pldB; lysophospholipase L2 (EC:3.1.1.5)
Alpha/beta hydrolase family protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IH81_9FIRM
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:CDE51159.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L3_102_000M1_scaffold_1424_10
unknown

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comp(9936..10406)
DNA (471bp) protein (157aa)

This feature has no annotations

L3_102_000M1_scaffold_1424_11
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(10441..10653)
DNA (213bp) protein (71aa)
DNA-binding helix-turn-helix protein n=8 Tax=Enterococcus faecium RepID=J5ZYF1_ENTFC
putative Xre family DNA-binding protein
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EJX69307.1}; TaxID=1134832 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium P1190.;"
L3_102_000M1_scaffold_1424_12
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10885..11367)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6AHY0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA51553.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
hypothetical protein
L3_102_000M1_scaffold_1424_13
unknown

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11649..11999
DNA (351bp) protein (117aa)

This feature has no annotations

L3_102_000M1_scaffold_1424_14
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


12003..13316
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IKA6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42543.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
aspartyl-tRNA synthetase
L3_102_000M1_scaffold_1424_15
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13692..13979
DNA (288bp) protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R9D1_CLOSW
glutamyl-tRNA(Gln) amidotransferase subunit C
L3_102_000M1_scaffold_1424_16
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13992..15449
DNA (1458bp) protein (486aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.- 6.3.5.6 6.3.5.7)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Clostridium sp. ASF356 RepID=N1ZMQ3_9CLOT
L3_102_000M1_scaffold_1424_17
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15453..16886
DNA (1434bp) protein (478aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000255|HAMAP-Rule:MF_00121}; Short=Asp/Glu-ADT subunit B {ECO:0000255|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000255|HAMAP-Rule:MF_00121};; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=GATB_CLOPH
glutamyl-tRNA(Gln) amidotransferase subunit B
L3_102_000M1_scaffold_1424_18
unknown

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comp(16903..17055)
DNA (153bp) protein (51aa)

This feature has no annotations

L3_102_000M1_scaffold_1424_19
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17079..18413
DNA (1335bp) protein (445aa)
Glu/Leu/Phe/Val dehydrogenase (EC:1.4.1.-)
Glutamate dehydrogenase n=1 Tax=Clostridium sp. CAG:448 RepID=R6TPC3_9CLOT
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
L3_102_000M1_scaffold_1424_20
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

18673..20337
DNA (1665bp) protein (555aa)
FAD binding domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y513_9FIRM
FAD binding domain protein {ECO:0000313|EMBL:EEF68926.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
L3_102_000M1_scaffold_1424_21
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

20473..20946
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EZT4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX93521.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hypothetical protein
L3_102_000M1_scaffold_1424_22
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21164..22654)
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I7Y7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE47979.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
family 1 extracellular solute-binding protein
L3_102_000M1_scaffold_1424_23
unknown

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22799..23329
DNA (531bp) protein (177aa)

This feature has no annotations

L3_102_000M1_scaffold_1424_24
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

Not on your lists

23440..23727
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:95 RepID=R7N0K8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF06116.1}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
sporulation protein YabP
L3_102_000M1_scaffold_1424_25
unknown

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23724..24041
DNA (318bp) protein (106aa)

This feature has no annotations

L3_102_000M1_scaffold_1424_26
unknown

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24149..24484
DNA (336bp) protein (112aa)

This feature has no annotations

L3_102_000M1_scaffold_1424_27
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24500..25399
DNA (900bp) protein (300aa)
Ppx/GppA phosphatase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I4A8_9FIRM
Ppx/GppA phosphatase {ECO:0000313|EMBL:CDE46714.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Ppx/GppA phosphatase
Displaying 27 items

View Taxonomy