ggKbase home page

L3_102_000M1_scaffold_1597

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_1597_1
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..1803
DNA (1803bp) protein (601aa)
UvrABC system protein C n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IH51_9FIRM
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
excinuclease ABC subunit C
L3_102_000M1_scaffold_1597_2
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2526..5378)
DNA (2853bp) protein (951aa)
UvrABC system protein A n=1 Tax=Clostridium termitidis CT1112 RepID=S0FMY1_9CLOT
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
excinuclease ABC subunit A
L3_102_000M1_scaffold_1597_3
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5389..7455)
DNA (2067bp) protein (689aa)
UvrABC system protein B n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I8M0_9FIRM
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
excinuclease ABC subunit B
L3_102_000M1_scaffold_1597_4
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

Not on your lists

7575..8051
DNA (477bp) protein (159aa)
Exonuclease SbcC n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BC82_9FIRM
Exonuclease SbcC {ECO:0000313|EMBL:CDD62910.1}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
sbcC; exonuclease SbcC
L3_102_000M1_scaffold_1597_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8020..8973
DNA (954bp) protein (318aa)
Exonuclease SbcCD, C subunit n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKX6_9FIRM
Exonuclease SbcCD, C subunit {ECO:0000313|EMBL:EDY34039.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
sbcC; exonuclease SbcC
L3_102_000M1_scaffold_1597_6
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(9165..9683)
DNA (519bp) protein (173aa)
MerR family transcriptional regulator n=3 Tax=Clostridium perfringens RepID=H7CVF0_CLOPF
MerR family transcriptional regulator
Tax=RBG_13_Chloroflexi_51_18_curated
L3_102_000M1_scaffold_1597_7
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9909..10679
DNA (771bp) protein (257aa)
RNA methyltransferase TrmH family group 3 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I5A3_9FIRM
RNA methyltransferase TrmH family group 3 {ECO:0000313|EMBL:CDE46795.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
rRNA methyltransferase
L3_102_000M1_scaffold_1597_8
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

10693..10944
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EWV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX92521.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hypothetical protein
L3_102_000M1_scaffold_1597_9
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

11056..12252
DNA (1197bp) protein (399aa)
L-threonine ammonia-lyase (EC:4.3.1.19)
L-threonine ammonia-lyase {ECO:0000313|EMBL:ADL08534.1}; EC=4.3.1.19 {ECO:0000313|EMBL:ADL08534.1};; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermosediminibacter.;" source="Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 /; JW/IW-1228P).;"
L-threonine ammonia-lyase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RYW0_THEOJ
L3_102_000M1_scaffold_1597_10
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12680..14062)
DNA (1383bp) protein (461aa)
Mg2+ transporter (MgtE) n=1 Tax=Roseburia sp. CAG:100 RepID=R7R2C3_9FIRM
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
Mg2+ transporter (mgtE)
L3_102_000M1_scaffold_1597_11
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14271..15332)
DNA (1062bp) protein (354aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
UDP-N-acetylglucosamine-N-acetylmuramyl-pentapeptide pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IBV6_9FIRM
L3_102_000M1_scaffold_1597_12
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15595..16791
DNA (1197bp) protein (399aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IH53_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE51134.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L3_102_000M1_scaffold_1597_13
Eubacterium brachy, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16933..18234)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Eubacterium brachy ATCC 33089 RepID=V1CKD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESE30547.1}; TaxID=1321814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium brachy ATCC 33089.;"
L3_102_000M1_scaffold_1597_14
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18652..19836
DNA (1185bp) protein (395aa)
AvtA3; aspartate aminotransferase (EC:2.6.1.1)
Aminotransferase class I and II n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IF48_9FIRM
Aminotransferase class I and II {ECO:0000313|EMBL:CDE50429.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
L3_102_000M1_scaffold_1597_15
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

Not on your lists

20394..22646
DNA (2253bp) protein (751aa)
formate acetyltransferase 1 (EC:2.3.1.54)
Formate acetyltransferase n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BB07_9FIRM
Formate acetyltransferase {ECO:0000313|EMBL:CDD62789.1}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
L3_102_000M1_scaffold_1597_16
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22633..23382
DNA (750bp) protein (250aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
pyruvate formate-lyase 1-activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase 1-activating enzyme n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZKJ5_9FIRM
L3_102_000M1_scaffold_1597_17
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23396..24478
DNA (1083bp) protein (361aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
HPr kinase/phosphorylase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IGU1_9FIRM
HPr kinase
L3_102_000M1_scaffold_1597_18
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24561..25508
DNA (948bp) protein (316aa)
Glucokinase ROK family n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IDA3_9FIRM
Glucokinase ROK family {ECO:0000313|EMBL:CDE49779.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
ROK family glucokinase
L3_102_000M1_scaffold_1597_19
unknown

Not on your lists

comp(25977..26423)
DNA (447bp) protein (149aa)

This feature has no annotations

L3_102_000M1_scaffold_1597_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26463..27689)
DNA (1227bp) protein (409aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
6-phosphofructokinase (EC:2.7.1.11)
Phosphofructokinase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZGS2_9FIRM
L3_102_000M1_scaffold_1597_21
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27865..29046
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IGE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE50859.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
L3_102_000M1_scaffold_1597_22
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29536..31131
DNA (1596bp) protein (532aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Ribonuclease Y n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IJ06_9FIRM
hypothetical protein
L3_102_000M1_scaffold_1597_23
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31427..33820
DNA (2394bp) protein (798aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IKI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE51132.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
glycoside hydrolase family protein
L3_102_000M1_scaffold_1597_24
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33940..34689
DNA (750bp) protein (250aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IIJ6_9FIRM
L3_102_000M1_scaffold_1597_25
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34723..35739
DNA (1017bp) protein (339aa)
Glycosyltransferase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IHI4_9FIRM
Glycosyltransferase {ECO:0000313|EMBL:CDE51229.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
glycosyltransferase
L3_102_000M1_scaffold_1597_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36090..37055
DNA (966bp) protein (322aa)
ABC transporter substrate binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL17_9FIRM
ABC transporter substrate binding protein {ECO:0000313|EMBL:EFB76675.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type uncharacterized transport system, periplasmic component
L3_102_000M1_scaffold_1597_27
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37147..38070
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IL02_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE51282.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
ABC-type uncharacterized transport system, permease component
L3_102_000M1_scaffold_1597_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38063..38872
DNA (810bp) protein (270aa)
ABC-type uncharacterized transport system, ATPase component n=2 Tax=Roseburia intestinalis RepID=D4KLH3_9FIRM
ABC-type uncharacterized transport system, ATPase component
ABC-type uncharacterized transport system, ATPase component {ECO:0000313|EMBL:CBL07725.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_102_000M1_scaffold_1597_29
unknown

Not on your lists

38886..39071
DNA (186bp) protein (62aa)

This feature has no annotations

L3_102_000M1_scaffold_1597_30
Sphaerochaeta globosa, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(39086..40105)
DNA (1020bp) protein (340aa)
Purine nucleoside permease n=1 Tax=Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy) RepID=F0RUL7_SPHGB
purine nucleoside permease
Purine nucleoside permease {ECO:0000313|EMBL:ADY12379.1}; Flags: Precursor;; TaxID=158189 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy); (Spirochaeta sp. (strain Buddy)).;"
Displaying items 1-30 of 45 in total

View Taxonomy