ggKbase home page

L3_102_000M1_scaffold_3277

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_3277_1
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..351
DNA (351bp) protein (117aa)
putative cadmium-transporting ATPase (EC:3.6.3.5)
Putative cadmium-transporting ATPase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TDW9_9FIRM
Putative cadmium-transporting ATPase {ECO:0000313|EMBL:CDC67899.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_102_000M1_scaffold_3277_2
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(588..767)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9MDR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS66012.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L3_102_000M1_scaffold_3277_3
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(833..1891)
DNA (1059bp) protein (353aa)
mnmA; tRNA uridine-sulfurtransferase (EC:2.8.1.-)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KRG9_OSCVS
L3_102_000M1_scaffold_3277_4
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2230..3036)
DNA (807bp) protein (269aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M235_9FIRM
hypothetical protein
L3_102_000M1_scaffold_3277_5
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3358..4380
DNA (1023bp) protein (341aa)
gap; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KRH2_OSCVS
L3_102_000M1_scaffold_3277_6
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4679..5224)
DNA (546bp) protein (182aa)
Ribosomal subunit interface protein n=2 Tax=Oscillibacter RepID=U2RTC3_9FIRM
Ribosomal subunit interface protein {ECO:0000313|EMBL:ERK65037.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
putative ribosome-associated protein
L3_102_000M1_scaffold_3277_7
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5569..5970)
DNA (402bp) protein (134aa)
Fe2+/Zn2+ uptake regulation protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FK38_9CLOT
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:EMS72560.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
ferric uptake regulator, Fur family
L3_102_000M1_scaffold_3277_8
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6109..7365)
DNA (1257bp) protein (419aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TIX3_9FIRM
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:CDC69654.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_102_000M1_scaffold_3277_9
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7612..8556)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9MBN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65262.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_102_000M1_scaffold_3277_10
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8654..9931)
DNA (1278bp) protein (426aa)
Putative membrane protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6T902_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDC69883.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_102_000M1_scaffold_3277_11
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9959..10957)
DNA (999bp) protein (333aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
arcB; ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M2I4_9FIRM
L3_102_000M1_scaffold_3277_12
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11750..12973)
DNA (1224bp) protein (408aa)
Arginine deiminase {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997}; Short=ADI {ECO:0000256|HAMAP-Rule:MF_00242};; EC=3.5.3.6 {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997};; Arginine dihydrolase {ECO:0000256|HAMAP-Rule:MF_00242}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
arcA; arginine deiminase (EC:3.5.3.6)
Arginine deiminase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TJH0_9FIRM
L3_102_000M1_scaffold_3277_13
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13093..13731
DNA (639bp) protein (213aa)
thiamine pyrophosphokinase (EC:2.7.6.2)
Thiamine pyrophosphokinase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9LVM1_9FIRM
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EOS62849.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_102_000M1_scaffold_3277_14
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13822..14433)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M2F9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65239.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
Rubrerythrin
L3_102_000M1_scaffold_3277_15
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14809..16326)
DNA (1518bp) protein (506aa)
Mg chelatase-like protein n=2 Tax=Oscillibacter RepID=U2RN46_9FIRM
Mg chelatase-like protein {ECO:0000313|EMBL:ERK64417.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
putative magnesium chelatase
L3_102_000M1_scaffold_3277_16
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16623..20189
DNA (3567bp) protein (1189aa)
pyruvate-ferredoxin (flavodoxin) oxidoreductase (EC:1.2.7.-)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4L1Y3_OSCVS
L3_102_000M1_scaffold_3277_17
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20740..21306
DNA (567bp) protein (189aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2R9F8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK65169.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L3_102_000M1_scaffold_3277_18
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21520..22575
DNA (1056bp) protein (352aa)
Heat-inducible transcription repressor hrcA n=2 Tax=Oscillibacter RepID=U2QHN5_9FIRM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hrcA; heat-inducible transcription repressor HrcA
L3_102_000M1_scaffold_3277_19
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22572..23171
DNA (600bp) protein (200aa)
Protein GrpE n=2 Tax=Oscillibacter RepID=U2R0S0_9FIRM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
grpE; GrpE protein
L3_102_000M1_scaffold_3277_20
unknown

Not on your lists

23184..23276
DNA (93bp) protein (31aa)

This feature has no annotations

L3_102_000M1_scaffold_3277_21
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

23401..24930
DNA (1530bp) protein (510aa)
Chaperone protein DnaK n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SG70_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
dnaK; chaperone protein DnaK
Displaying 21 items

View Taxonomy