ggKbase home page

L3_102_000M1_scaffold_3996

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_3996_1
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..697
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63725.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_102_000M1_scaffold_3996_2
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

814..1983
DNA (1170bp) protein (390aa)
Fic family protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HUW0_9FIRM
Fic family protein {ECO:0000313|EMBL:CCY28557.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
hypothetical protein
L3_102_000M1_scaffold_3996_3
unknown

Not on your lists

2561..3028
DNA (468bp) protein (156aa)

This feature has no annotations

L3_102_000M1_scaffold_3996_4
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3459..3863)
DNA (405bp) protein (135aa)
30S ribosomal protein S9 n=1 Tax=Oscillibacter sp. 1-3 RepID=R9MD09_9FIRM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
rpsI; 30S ribosomal protein S9
L3_102_000M1_scaffold_3996_5
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3878..4303)
DNA (426bp) protein (142aa)
50S ribosomal protein L13 n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M4X5_9FIRM
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
rplM; 50S ribosomal protein L13
L3_102_000M1_scaffold_3996_6
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4542..4805)
DNA (264bp) protein (88aa)
Pro-sigmaK processing inhibitor BofA n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M448_9FIRM
Pro-sigmaK processing inhibitor BofA {ECO:0000313|EMBL:EOS65745.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L3_102_000M1_scaffold_3996_7
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4796..5047)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KUD8_OSCVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK97979.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_102_000M1_scaffold_3996_8
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5144..5620
DNA (477bp) protein (159aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
putative deaminase (EC:3.5.4.-)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M4J0_9FIRM
L3_102_000M1_scaffold_3996_9
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5827..6648)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M4W3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS66020.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L3_102_000M1_scaffold_3996_10
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(6894..7118)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DUV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81742.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L3_102_000M1_scaffold_3996_11
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7341..9083)
DNA (1743bp) protein (581aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
pyk; pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=2 Tax=Oscillibacter RepID=U2SBH5_9FIRM
L3_102_000M1_scaffold_3996_12
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

9389..9616
DNA (228bp) protein (76aa)
ROK family protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S7B4_9FIRM
ROK family protein {ECO:0000313|EMBL:CCZ46724.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
ROK family protein
L3_102_000M1_scaffold_3996_13
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

9600..10292
DNA (693bp) protein (231aa)
Transcriptional regulator/sugar kinase (EC:2.7.1.2)
ROK family protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S7B4_9FIRM
ROK family protein {ECO:0000313|EMBL:CCZ46724.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
L3_102_000M1_scaffold_3996_14
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10409..11695)
DNA (1287bp) protein (429aa)
Transporter, CPA2 family n=2 Tax=Oscillibacter RepID=U2Q701_9FIRM
Transporter, CPA2 family {ECO:0000313|EMBL:ERK65397.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
sodium/proton-potassium antiporter GerN, CPA2 family (TC 2.A.37.2.2)
L3_102_000M1_scaffold_3996_15
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12017..12727
DNA (711bp) protein (237aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=U5FB64_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHF07994.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
PAP2 superfamily.
L3_102_000M1_scaffold_3996_16
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12829..13656
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H172_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27241.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
rRNA methylases
L3_102_000M1_scaffold_3996_17
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14075..14833)
DNA (759bp) protein (253aa)
Putative DNA-binding protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KXV5_OSCVS
putative DNA-binding protein
Putative DNA-binding protein {ECO:0000313|EMBL:BAK98559.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_102_000M1_scaffold_3996_18
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14924..17749)
DNA (2826bp) protein (942aa)
UvrABC system protein A n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M5J3_9FIRM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
uvrA; UvrABC system protein A
L3_102_000M1_scaffold_3996_19
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(17877..18362)
DNA (486bp) protein (162aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DUZ5_9FIRM
YbaK family protein
L3_102_000M1_scaffold_3996_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18375..19115)
DNA (741bp) protein (247aa)
TraX protein n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K7T8_9FIRM
TraX protein.
TraX protein {ECO:0000313|EMBL:CBL00901.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_102_000M1_scaffold_3996_21
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19218..19442)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TJP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68036.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_102_000M1_scaffold_3996_22
unknown

Not on your lists

comp(19439..19903)
DNA (465bp) protein (155aa)

This feature has no annotations

L3_102_000M1_scaffold_3996_23
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20013..21785)
DNA (1773bp) protein (591aa)
UvrABC system protein B (Fragment) n=2 Tax=Oscillibacter RepID=U2R639_9FIRM
UvrABC system protein B {ECO:0000256|RuleBase:RU003587, ECO:0000256|SAAS:SAAS00009141}; Flags: Fragment;; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
uvrB; UvrABC system protein B
L3_102_000M1_scaffold_3996_24
Vibrio furnissii, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21805..22260)
DNA (456bp) protein (152aa)
MarR-family transcriptional regulator n=1 Tax=Vibrio furnissii (strain DSM 14383 / NCTC 11218) RepID=F0LZ07_VIBFN
MarR-family transcriptional regulator
MarR-family transcriptional regulator {ECO:0000313|EMBL:ADT89156.1}; TaxID=903510 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio furnissii (strain DSM 14383 / NCTC 11218).;"
L3_102_000M1_scaffold_3996_25
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22381..23073)
DNA (693bp) protein (231aa)
Putative DNA repair protein RadC n=2 Tax=Oscillibacter RepID=U2R325_9FIRM
Putative DNA repair protein RadC {ECO:0000313|EMBL:ERK63977.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
radC; putative DNA repair protein radC
L3_102_000M1_scaffold_3996_26
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23412..25088)
DNA (1677bp) protein (559aa)
Recombinase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GPC8_9FIRM
Recombinase {ECO:0000313|EMBL:CDB26280.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
resolvase family site-specific recombinase
L3_102_000M1_scaffold_3996_27
unknown

Not on your lists

comp(25127..25288)
DNA (162bp) protein (54aa)

This feature has no annotations

Displaying 27 items

View Taxonomy