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L3_102_000M1_scaffold_2963

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_2963_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..111
DNA (111bp) protein (37aa)
diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K0C5_9FIRM
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_102_000M1_scaffold_2963_2
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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93..413
DNA (321bp) protein (107aa)
Riboflavin synthase alpha subunit n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AD00_9FIRM
Riboflavin synthase alpha subunit {ECO:0000313|EMBL:CCX40573.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
riboflavin synthase, alpha subunit
L3_102_000M1_scaffold_2963_3
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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422..778
DNA (357bp) protein (119aa)
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:EDP20843.1}; EC=2.5.1.9 {ECO:0000313|EMBL:EDP20843.1};; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
ribE; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
Riboflavin synthase, alpha subunit n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDB0_9FIRM
L3_102_000M1_scaffold_2963_4
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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794..1990
DNA (1197bp) protein (399aa)
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.99.12)
Riboflavin biosynthesis protein RibBA n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K0C4_9FIRM
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
L3_102_000M1_scaffold_2963_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2139..2462
DNA (324bp) protein (108aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.-)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K0C3_9FIRM
L3_102_000M1_scaffold_2963_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2477..2887
DNA (411bp) protein (137aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K0C2_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBK99721.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_102_000M1_scaffold_2963_7
unknown

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3057..3305
DNA (249bp) protein (83aa)

This feature has no annotations

L3_102_000M1_scaffold_2963_8
unknown

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3302..3568
DNA (267bp) protein (89aa)

This feature has no annotations

L3_102_000M1_scaffold_2963_9
unknown

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3655..4341
DNA (687bp) protein (229aa)

This feature has no annotations

L3_102_000M1_scaffold_2963_10
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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comp(4890..5369)
DNA (480bp) protein (160aa)
Acetyltransferases n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EKH0_9FIRM
Acetyltransferases {ECO:0000313|EMBL:CCX91854.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
Acetyltransferases
L3_102_000M1_scaffold_2963_11
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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5785..6894
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DBP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81591.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
GltB; glutamate synthase domain 1
L3_102_000M1_scaffold_2963_12
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6894..8399
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2Z2N5_9FIRM
Glutamate synthase {ECO:0000313|EMBL:EXM37496.1}; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
GltB; glutamate synthase domain 2
L3_102_000M1_scaffold_2963_13
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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8450..9169
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D9C1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81589.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
GltB; glutamate synthase domain 3
L3_102_000M1_scaffold_2963_14
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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9215..9934
DNA (720bp) protein (240aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6T4C3_9FIRM
L3_102_000M1_scaffold_2963_15
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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9924..11426
DNA (1503bp) protein (501aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
purF; amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UC05_9FIRM
L3_102_000M1_scaffold_2963_16
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11605..12666)
DNA (1062bp) protein (354aa)
Glycerol dehydrogenase and related enzymes (EC:1.1.1.6)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UBZ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68277.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_102_000M1_scaffold_2963_17
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12708..13934)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TKA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68276.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_102_000M1_scaffold_2963_18
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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comp(14593..15360)
DNA (768bp) protein (256aa)
Transcriptional regulator MerR family n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AFS9_9FIRM
Transcriptional regulator MerR family {ECO:0000313|EMBL:CCX39817.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
Predicted transcriptional regulators
L3_102_000M1_scaffold_2963_19
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(15588..16337)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IC23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY39605.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L3_102_000M1_scaffold_2963_20

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comp(16334..16744)
DNA (411bp) protein (137aa)
def; peptide deformylase (EC:3.5.1.88)
N-formylmethionyl-tRNA deformylase n=1 Tax=human gut metagenome RepID=K1TF33_9ZZZZ
N-formylmethionyl-tRNA deformylase {ECO:0000313|EMBL:EKC68388.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_102_000M1_scaffold_2963_21
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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comp(16836..17060)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DBE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA82264.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L3_102_000M1_scaffold_2963_22
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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17333..20440
DNA (3108bp) protein (1036aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CA67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO34336.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Ig domain-containing protein
Displaying 22 items

View Taxonomy