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L3_102_000M1_scaffold_1296

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_1296_1
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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1..954
DNA (954bp) protein (318aa)
Ser/Thr phosphatase family protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S3J8_9FIRM
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:CCZ45444.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
L3_102_000M1_scaffold_1296_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1092..2306)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=2 Tax=Faecalibacterium prausnitzii RepID=A8S997_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP22182.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Predicted ATPase (AAA+ superfamily)
L3_102_000M1_scaffold_1296_3
unknown

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2660..2992
DNA (333bp) protein (111aa)

This feature has no annotations

L3_102_000M1_scaffold_1296_4
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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3076..4794
DNA (1719bp) protein (573aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HDL5_9FIRM
L3_102_000M1_scaffold_1296_5
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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4813..5358
DNA (546bp) protein (182aa)
Acetolactate synthase small subunit n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HI65_9FIRM
Acetolactate synthase small subunit {ECO:0000313|EMBL:CCY27819.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
acetolactate synthase small subunit
L3_102_000M1_scaffold_1296_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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5416..6438
DNA (1023bp) protein (341aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Ketol-acid reductoisomerase n=3 Tax=Clostridiales RepID=G9YNN5_9FIRM
ketol-acid reductoisomerase
L3_102_000M1_scaffold_1296_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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6458..8119
DNA (1662bp) protein (554aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEW3_9FIRM
L3_102_000M1_scaffold_1296_8
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8131..9354
DNA (1224bp) protein (408aa)
Predicted ATPase (AAA+ superfamily) n=1 Tax=Coprococcus catus GD/7 RepID=D4J3X6_9FIRM
Predicted ATPase (AAA+ superfamily)
Predicted ATPase (AAA+ superfamily) {ECO:0000313|EMBL:CBK79047.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L3_102_000M1_scaffold_1296_9
unknown

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comp(9390..9512)
DNA (123bp) protein (41aa)

This feature has no annotations

L3_102_000M1_scaffold_1296_10
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9515..11704)
DNA (2190bp) protein (730aa)
Transcriptional regulator n=1 Tax=Clostridium pasteurianum BC1 RepID=R4KA78_CLOPA
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGK98596.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
L3_102_000M1_scaffold_1296_11

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11964..13028
DNA (1065bp) protein (355aa)
Extracellular solute-binding protein family 1 (Fragment) n=1 Tax=human gut metagenome RepID=K1T656_9ZZZZ
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:EKC65058.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
extracellular solute-binding protein
L3_102_000M1_scaffold_1296_12
Paenibacillus sp. P22, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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13165..14814
DNA (1650bp) protein (550aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Paenibacillus sp. P22 RepID=T2LPC6_9BACL
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDN41562.1}; TaxID=483908 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. P22.;"
binding-protein-dependent transport system inner membrane protein
L3_102_000M1_scaffold_1296_13
Paenibacillus sp. D9, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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14832..15920
DNA (1089bp) protein (363aa)
Fe(3+) ions import ATP-binding protein FbpC n=1 Tax=Paenibacillus sp. P22 RepID=T2LP96_9BACL
Uncharacterized protein {ECO:0000313|EMBL:KKC46523.1}; TaxID=665792 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. D9.;"
ABC transporter
L3_102_000M1_scaffold_1296_14
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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15910..16809
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UDU0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68957.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_102_000M1_scaffold_1296_15
Halanaerobium hydrogeniformans, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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comp(17507..18937)
DNA (1431bp) protein (477aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00037D5BF3
Na+/H+ antiporter NhaC-like protein
Na+/H+ antiporter NhaC-like protein {ECO:0000313|EMBL:ADQ15503.1}; TaxID=656519 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halanaerobium.;" source="Halanaerobium hydrogeniformans (Halanaerobium sp. (strain; sapolanicus)).;"
L3_102_000M1_scaffold_1296_16
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18959..19942)
DNA (984bp) protein (328aa)
1-aminocyclopropane-1-carboxylate deaminase (EC:3.5.99.7)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RLE1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC49713.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
L3_102_000M1_scaffold_1296_17
unknown

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20006..20359
DNA (354bp) protein (118aa)

This feature has no annotations

L3_102_000M1_scaffold_1296_18
Salinispira pacifica, Salinispira, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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20552..21232
DNA (681bp) protein (227aa)
Amino acid ABC transporter, amino acid-binding/permease protein n=1 Tax=Spirochaeta sp. L21-RPul-D2 RepID=V5WJM9_9SPIO
Amino acid ABC transporter, amino acid-binding/permease protein
Salinispira pacifica strain L21-RPul-D2, complete genome {ECO:0000313|EMBL:AHC15978.1}; TaxID=1307761 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Salinispira.;" source="Salinispira pacifica.;"
L3_102_000M1_scaffold_1296_19
Paenibacillus larvae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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21222..21971
DNA (750bp) protein (250aa)
glnQ2; glutamine transport ATP-binding protein GlnQ (EC:3.6.3.-)
Glutamine transport ATP-binding protein GlnQ {ECO:0000313|EMBL:AHD05380.1}; EC=3.6.3.- {ECO:0000313|EMBL:AHD05380.1};; TaxID=697284 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus larvae subsp. larvae DSM 25430.;"
UPI0003D6D7F3 related cluster n=1 Tax=unknown RepID=UPI0003D6D7F3
L3_102_000M1_scaffold_1296_20
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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22022..23050
DNA (1029bp) protein (343aa)
Ornithine cyclodeaminase (EC:4.3.1.12)
Ornithine cyclodeaminase {ECO:0000313|EMBL:CCP27382.1}; EC=4.3.1.12 {ECO:0000313|EMBL:CCP27382.1};; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
Ornithine cyclodeaminase n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LT57_TEPAE
L3_102_000M1_scaffold_1296_21
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23087..23893
DNA (807bp) protein (269aa)
Extracellular solute-binding protein family 3 n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MKT2_ALKOO
Arginine-binding extracellular protein ArtP {ECO:0000313|EMBL:KDR94385.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
artP2; amino acid ABC transporter substrate-binding protein, PAAT family
L3_102_000M1_scaffold_1296_22
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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comp(23964..25214)
DNA (1251bp) protein (417aa)
Capsule synthesis protein CapA n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5ATB9_9FIRM
Capsule synthesis protein CapA {ECO:0000313|EMBL:CCX46590.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)
L3_102_000M1_scaffold_1296_23
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

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25527..26087
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BF98_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD63692.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
sigma-70 family RNA polymerase sigma factor
L3_102_000M1_scaffold_1296_24
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26084..27103
DNA (1020bp) protein (340aa)
Putative uncharacterized protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1T8J3_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGD49791.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
hypothetical protein
L3_102_000M1_scaffold_1296_25
unknown

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27515..27574
DNA (60bp) protein (20aa)

This feature has no annotations

Displaying 25 items

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