ggKbase home page

L3_102_000M1_scaffold_1169

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_1169_1
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

235..849
DNA (615bp) protein (205aa)
Membrane protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C581_9CLOT
Membrane protein {ECO:0000313|EMBL:CDD73130.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L3_102_000M1_scaffold_1169_2
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(806..1345)
DNA (540bp) protein (180aa)
Putative sporulation protein YtaF n=1 Tax=Clostridium sp. CAG:62 RepID=R7C4P7_9CLOT
Putative sporulation protein YtaF {ECO:0000313|EMBL:CDD73129.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L3_102_000M1_scaffold_1169_3
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1442..3970
DNA (2529bp) protein (843aa)
calcium-transporting ATPase 1 (EC:3.6.3.8)
Calcium-translocating P-type ATPase PMCA-type n=1 Tax=Clostridium sp. CAG:62 RepID=R7C733_9CLOT
Calcium-translocating P-type ATPase PMCA-type {ECO:0000313|EMBL:CDD73128.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L3_102_000M1_scaffold_1169_4
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3948..4916)
DNA (969bp) protein (323aa)
Phosphoesterase RecJ domain protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C5U2_9CLOT
Phosphoesterase RecJ domain protein {ECO:0000313|EMBL:CDD73127.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
phosphoesterase RecJ domain-containing protein
L3_102_000M1_scaffold_1169_5
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5119..8616)
DNA (3498bp) protein (1166aa)
endo-1,4-beta-xylanase (EC:3.2.1.8)
Glycoside hydrolase family 10 n=1 Tax=Clostridium sp. CAG:62 RepID=R7C4U4_9CLOT
Glycoside hydrolase family 10 {ECO:0000313|EMBL:CDD73126.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L3_102_000M1_scaffold_1169_6
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8807..9901)
DNA (1095bp) protein (365aa)
Inner-membrane translocator n=1 Tax=Clostridium sp. CAG:62 RepID=R7C575_9CLOT
Inner-membrane translocator {ECO:0000313|EMBL:CDD73125.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
L3_102_000M1_scaffold_1169_7
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9901..10956)
DNA (1056bp) protein (352aa)
Inner-membrane translocator n=1 Tax=Clostridium sp. CAG:62 RepID=R7C4P1_9CLOT
Inner-membrane translocator {ECO:0000313|EMBL:CDD73124.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
L3_102_000M1_scaffold_1169_8
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10956..12479)
DNA (1524bp) protein (508aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C728_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD73123.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_102_000M1_scaffold_1169_9
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12599..13666)
DNA (1068bp) protein (356aa)
Monosaccharide ABC transporter substrate-binding protein CUT2 family (TC 3.A.1.2.-) n=1 Tax=Clostridium sp. CAG:62 RepID=R7C5T7_9CLOT
Monosaccharide ABC transporter substrate-binding protein CUT2 family (TC 3.A.1.2.-) {ECO:0000313|EMBL:CDD73122.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_102_000M1_scaffold_1169_10
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13823..15286)
DNA (1464bp) protein (488aa)
Two component system histidine kinase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C4T8_9CLOT
Two component system histidine kinase {ECO:0000313|EMBL:CDD73121.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
integral membrane sensor signal transduction histidine kinase
L3_102_000M1_scaffold_1169_11
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15283..16917)
DNA (1635bp) protein (545aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C571_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD73120.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
two component system response regulator
L3_102_000M1_scaffold_1169_12
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16951..18543)
DNA (1593bp) protein (531aa)
Carbohydrate kinase FGGY family protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C4N7_9CLOT
Carbohydrate kinase FGGY family protein {ECO:0000313|EMBL:CDD73119.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
carbohydrate kinase, FGGY
L3_102_000M1_scaffold_1169_13
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18567..19652)
DNA (1086bp) protein (362aa)
UDP-galactose 4-epimerase (EC:5.1.3.2)
UDP-galactose 4-epimerase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C724_9CLOT
UDP-galactose 4-epimerase {ECO:0000313|EMBL:CDD73118.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L3_102_000M1_scaffold_1169_14
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19681..20844)
DNA (1164bp) protein (388aa)
Galactokinase {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00025843}; EC=2.7.1.6 {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00015833};; Galactose kinase {ECO:0000256|HAMAP-Rule:MF_00246}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Galactokinase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C5T0_9CLOT
galactokinase
L3_102_000M1_scaffold_1169_15
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21011..21286)
DNA (276bp) protein (92aa)
Preprotein translocase YajC subunit n=1 Tax=Clostridium sp. CAG:62 RepID=R7C4T2_9CLOT
Preprotein translocase YajC subunit {ECO:0000313|EMBL:CDD73116.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
preprotein translocase subunit YajC
L3_102_000M1_scaffold_1169_16
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21304..22446)
DNA (1143bp) protein (381aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C564_9CLOT
L3_102_000M1_scaffold_1169_17
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22447..24144)
DNA (1698bp) protein (566aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C4N1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD73114.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
acyl-CoA thioesterase
L3_102_000M1_scaffold_1169_18
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

comp(24335..24775)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AAZ9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCX39878.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
L3_102_000M1_scaffold_1169_19
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24765..25214)
DNA (450bp) protein (150aa)
Transcriptional regulator, MarR family n=2 Tax=Eubacterium RepID=C0EU67_9FIRM
Transcriptional regulator MarR family {ECO:0000313|EMBL:CDB18142.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
Transcriptional regulators
L3_102_000M1_scaffold_1169_20
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25322..27388)
DNA (2067bp) protein (689aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C719_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD73113.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Listeria/Bacterioides repeat
L3_102_000M1_scaffold_1169_21
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27821..28867)
DNA (1047bp) protein (349aa)
Transposase and inactivated derivatives, IS30 family n=2 Tax=Clostridiales RepID=D4M150_9FIRM
Transposase and inactivated derivatives, IS30 family
Transposase and inactivated derivatives, IS30 family {ECO:0000313|EMBL:CBL24962.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_102_000M1_scaffold_1169_22
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28932..29579)
DNA (648bp) protein (216aa)
SCP-like protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C4L4_9CLOT
SCP-like protein {ECO:0000313|EMBL:CDD73046.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Displaying 22 items

View Taxonomy