ggKbase home page

L3_102_000M1_scaffold_1178

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_1178_1
Veillonella atypica, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(312..2792)
DNA (2481bp) protein (827aa)
Type III restriction enzyme, res subunit n=1 Tax=Veillonella atypica ACS-134-V-Col7a RepID=E1LDR3_9FIRM
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:EFL57338.1}; TaxID=866778 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella atypica ACS-134-V-Col7a.;"
DEAD/DEAH box helicase
L3_102_000M1_scaffold_1178_2
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2847..4835)
DNA (1989bp) protein (663aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NAP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF09187.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
AlwI restriction endonuclease family protein
L3_102_000M1_scaffold_1178_3
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4853..6982)
DNA (2130bp) protein (710aa)
Site-specific DNA-methyltransferase (adenine-specific) {ECO:0000256|RuleBase:RU361257}; EC=2.1.1.72 {ECO:0000256|RuleBase:RU361257};; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NAS0_9FIRM
Adenine-specific methyltransferase
L3_102_000M1_scaffold_1178_4
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7148..8662)
DNA (1515bp) protein (505aa)
Mobilization protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HJU0_9FIRM
Mobilization protein {ECO:0000313|EMBL:CCY29858.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
mobilization protein
L3_102_000M1_scaffold_1178_5
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8901..9203)
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T0J9_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC38134.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_102_000M1_scaffold_1178_6
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9481..9837
DNA (357bp) protein (119aa)
Site-specific recombinase n=2 Tax=Clostridiales RepID=G2T0J6_ROSHA
site-specific recombinase
Site-specific recombinase {ECO:0000313|EMBL:AEN95528.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_102_000M1_scaffold_1178_7
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10037..10618)
DNA (582bp) protein (194aa)
30S ribosomal protein S9 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CDF4_9CLOT
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
rpsI; 30S ribosomal protein S9
L3_102_000M1_scaffold_1178_8
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10644..11072)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CCA8_9CLOT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
LSU ribosomal protein L13P
L3_102_000M1_scaffold_1178_9
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11403..11912
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CB98_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75346.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
RNA polymerase sigma factor, sigma-70 family
L3_102_000M1_scaffold_1178_10
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11930..13819
DNA (1890bp) protein (630aa)
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBM9_9CLOT
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats {ECO:0000313|EMBL:CDD75345.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L3_102_000M1_scaffold_1178_11
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13829..14590)
DNA (762bp) protein (254aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAY4_9CLOT
L3_102_000M1_scaffold_1178_12
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14600..15406)
DNA (807bp) protein (269aa)
Energy-coupling factor transporter transmembrane protein EcfT n=2 Tax=root RepID=R7CDF2_9CLOT
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000313|EMBL:CDD75343.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L3_102_000M1_scaffold_1178_13
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15424..16266)
DNA (843bp) protein (281aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
ABC transporter related n=1 Tax=Clostridium sp. CAG:62 RepID=R7CCA3_9CLOT
ABC transporter
L3_102_000M1_scaffold_1178_14
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16276..17127)
DNA (852bp) protein (284aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CB94_9CLOT
ABC transporter
L3_102_000M1_scaffold_1178_15
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17204..17740)
DNA (537bp) protein (179aa)
50S ribosomal protein L17 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBM4_9CLOT
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
LSU ribosomal protein L17P
L3_102_000M1_scaffold_1178_16
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17765..18730)
DNA (966bp) protein (322aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAY1_9CLOT
DNA-directed RNA polymerase subunit alpha
L3_102_000M1_scaffold_1178_17
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18760..19353)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CDE9_9CLOT
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
30S ribosomal protein S4
L3_102_000M1_scaffold_1178_18
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19379..19774)
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CC96_9CLOT
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
SSU ribosomal protein S11P
L3_102_000M1_scaffold_1178_19
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19792..20160)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CB90_9CLOT
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
30S ribosomal protein S13
L3_102_000M1_scaffold_1178_20
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20727..20945)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBM0_9CLOT
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
translation initiation factor IF-1
L3_102_000M1_scaffold_1178_21
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20956..21711)
DNA (756bp) protein (252aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAX7_9CLOT
L3_102_000M1_scaffold_1178_22
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21750..22391)
DNA (642bp) protein (214aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CDE6_9CLOT
L3_102_000M1_scaffold_1178_23
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22501..23850)
DNA (1350bp) protein (450aa)
Protein translocase subunit SecY n=1 Tax=Clostridium sp. CAG:62 RepID=R7CC92_9CLOT
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
preprotein translocase subunit SecY
L3_102_000M1_scaffold_1178_24
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23850..24290)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CB86_9CLOT
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
rplO; 50S ribosomal protein L15
L3_102_000M1_scaffold_1178_25
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24308..24490)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBL7_9CLOT
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
LSU ribosomal protein L30P
L3_102_000M1_scaffold_1178_26
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24504..25013)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAX4_9CLOT
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
SSU ribosomal protein S5P
L3_102_000M1_scaffold_1178_27
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25030..25398)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CDE1_9CLOT
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
rplR; 50S ribosomal protein L18
L3_102_000M1_scaffold_1178_28
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25416..25958)
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CC87_9CLOT
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
50S ribosomal protein L6
L3_102_000M1_scaffold_1178_29
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(26003..26404)
DNA (402bp) protein (134aa)
30S ribosomal protein S8 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CB83_9CLOT
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
rpsH; 30S ribosomal protein S8
L3_102_000M1_scaffold_1178_30
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(26418..26603)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBL4_9CLOT
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Ribosomal protein S14
Displaying items 1-30 of 73 in total

View Taxonomy