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L3_102_000M1_scaffold_674

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_674_1
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(97..1068)
DNA (972bp) protein (324aa)
RNA polymerase sigma factor n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GW94_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
sigma-70 family RNA polymerase sigma factor
L3_102_000M1_scaffold_674_2
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(1101..2831)
DNA (1731bp) protein (577aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
dnaG; DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LYV0_9FIRM
L3_102_000M1_scaffold_674_3
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(2873..4528)
DNA (1656bp) protein (552aa)
Exported peptidase n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HTE9_9FIRM
Exported peptidase {ECO:0000313|EMBL:CDB29167.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
exported peptidase
L3_102_000M1_scaffold_674_4
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(4562..5656)
DNA (1095bp) protein (365aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GUN9_9FIRM
L3_102_000M1_scaffold_674_5
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(5698..6783)
DNA (1086bp) protein (362aa)
Methicillin resistance protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H5H9_9FIRM
Methicillin resistance protein {ECO:0000313|EMBL:CDB29169.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
Methicillin resistance protein
L3_102_000M1_scaffold_674_6
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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7007..7693
DNA (687bp) protein (229aa)
RNA polymerase sigma factor n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GW13_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
putative RNA polymerase sigma factor
L3_102_000M1_scaffold_674_7
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(7818..9602)
DNA (1785bp) protein (595aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H6X7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB29664.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
hypothetical protein
L3_102_000M1_scaffold_674_8
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(9578..11308)
DNA (1731bp) protein (577aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GYT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB29665.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
ABC transporter
L3_102_000M1_scaffold_674_9
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(11322..11750)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H806_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB29666.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
hypothetical protein
L3_102_000M1_scaffold_674_10
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

12003..16637
DNA (4635bp) protein (1545aa)
Subtilisin-like serine protease n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H216_9FIRM
Subtilisin-like serine protease {ECO:0000313|EMBL:CDB30825.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
peptidase S8 and S53 subtilisin kexin sedolisin
L3_102_000M1_scaffold_674_11
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

16941..18026
DNA (1086bp) protein (362aa)
MarR family protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H8C0_9FIRM
MarR family protein {ECO:0000313|EMBL:CDB29801.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
L3_102_000M1_scaffold_674_12
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18265..18939)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EN17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE04060.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
ABC transporter ATPase subunit
L3_102_000M1_scaffold_674_13
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18943..20124)
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EP55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE04058.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
ABC-type transport system, involved in lipoprotein release, permease component
L3_102_000M1_scaffold_674_14
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20121..22040)
DNA (1920bp) protein (640aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GLA5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB25225.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L3_102_000M1_scaffold_674_15
unknown

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comp(22757..22927)
DNA (171bp) protein (57aa)

This feature has no annotations

L3_102_000M1_scaffold_674_16
unknown

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comp(22911..23273)
DNA (363bp) protein (121aa)

This feature has no annotations

L3_102_000M1_scaffold_674_17
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23689..24960)
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:248 RepID=R6JV35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF38676.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L3_102_000M1_scaffold_674_18
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24957..25676)
DNA (720bp) protein (240aa)
LytTr DNA-binding domain protein n=2 Tax=Clostridium symbiosum RepID=E9SLK9_CLOSY
LytTr DNA-binding domain protein {ECO:0000313|EMBL:ERI78357.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
transcriptional regulator, LytR/AlgR family
L3_102_000M1_scaffold_674_19
unknown

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comp(25780..25992)
DNA (213bp) protein (71aa)

This feature has no annotations

L3_102_000M1_scaffold_674_20
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25992..26786)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens CAG:72 RepID=R5ZYQ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA39621.1}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
hypothetical protein
L3_102_000M1_scaffold_674_21
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

27111..28676
DNA (1566bp) protein (522aa)
Phosphoglycerate mutase (2,3-diphosphoglycerate-independent) {ECO:0000256|SAAS:SAAS00058367}; EC=5.4.2.12 {ECO:0000256|SAAS:SAAS00058367};; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
phosphoglycerate mutase (EC:5.4.2.1)
Phosphoglycerate mutase n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EVM3_9FIRM
L3_102_000M1_scaffold_674_22
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

28801..29154
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GVS1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB29533.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
hypothetical protein
L3_102_000M1_scaffold_674_23
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

29203..30834
DNA (1632bp) protein (544aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H6P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB29534.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
hypothetical protein
L3_102_000M1_scaffold_674_24
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(31296..31934)
DNA (639bp) protein (213aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HUK3_9FIRM
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
redox-sensing transcriptional repressor Rex
L3_102_000M1_scaffold_674_25
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(32106..33494)
DNA (1389bp) protein (463aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
Signal transduction histidine kinase (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GVS4_9FIRM
L3_102_000M1_scaffold_674_26
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(33491..34165)
DNA (675bp) protein (225aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H6P6_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CDB29539.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_102_000M1_scaffold_674_27
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(34448..35539)
DNA (1092bp) protein (364aa)
Transcriptional regulator ArsR family n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GYI7_9FIRM
Transcriptional regulator ArsR family {ECO:0000313|EMBL:CDB29540.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
ArsR family transcriptional regulator
L3_102_000M1_scaffold_674_28
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35950..41472
DNA (5523bp) protein (1841aa)
Peptidase S8 and S53 subtilisin kexin sedolisin n=1 Tax=Clostridium sp. CAG:221 RepID=R6FSG4_9CLOT
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:CDB16123.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
peptidase S8 and S53 subtilisin kexin sedolisin
Displaying 28 items

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