ggKbase home page

L3_102_000M1_scaffold_2843

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_2843_1
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

408..1286
DNA (879bp) protein (293aa)
Uncharacterized protein id=3735808 bin=GWF2_Clostridiales_38_85 species=Sphaerochaeta coccoides genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
hypothetical protein
Tax=GWF2_Clostridiales_38_85_curated
L3_102_000M1_scaffold_2843_2
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1346..1987)
DNA (642bp) protein (214aa)
Putative ribonuclease n=1 Tax=Gordonia paraffinivorans NBRC 108238 RepID=M3VCM0_9ACTO
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
L3_102_000M1_scaffold_2843_3
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1980..2495)
DNA (516bp) protein (172aa)
Sigma-70 region 2 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3F8_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:CCX49823.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
RNA polymerase factor sigma C
L3_102_000M1_scaffold_2843_4
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2662..3636
DNA (975bp) protein (325aa)
HD domain-containing protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B162_9CLOT
HD domain-containing protein {ECO:0000313|EMBL:CCX49285.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
CMP-binding protein
L3_102_000M1_scaffold_2843_5
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3877..5220)
DNA (1344bp) protein (448aa)
Replicative DNA helicase n=1 Tax=Clostridium sp. CAG:138 RepID=R6AJG6_9CLOT
Replicative DNA helicase {ECO:0000313|EMBL:CDA51125.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
replicative DNA helicase
L3_102_000M1_scaffold_2843_6
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5260..5718)
DNA (459bp) protein (153aa)
50S ribosomal protein L9 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B6D6_9CLOT
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_102_000M1_scaffold_2843_7
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5715..7664)
DNA (1950bp) protein (650aa)
Phosphoesterase RecJ domain protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3B1_9CLOT
Phosphoesterase RecJ domain protein {ECO:0000313|EMBL:CCX49778.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
phosphoesterase domain-containing protein
L3_102_000M1_scaffold_2843_8
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7701..8651)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B316_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49668.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_102_000M1_scaffold_2843_9
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8868..9155
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3C0_9CLOT
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360, ECO:0000256|SAAS:SAAS00020539}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rpsF; 30S ribosomal protein S6
L3_102_000M1_scaffold_2843_10
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9192..9620
DNA (429bp) protein (143aa)
Single-stranded DNA-binding protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B767_9CLOT
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ssb; single-strand binding protein
L3_102_000M1_scaffold_2843_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9658..9900
DNA (243bp) protein (81aa)
30S ribosomal protein S18 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B462_9CLOT
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
SSU ribosomal protein S18P
L3_102_000M1_scaffold_2843_12
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10181..10753
DNA (573bp) protein (191aa)
RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3K4_9CLOT
RNA polymerase sigma factor {ECO:0000313|EMBL:CCX50160.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
RNA polymerase sigma factor, sigma-70 family
L3_102_000M1_scaffold_2843_13
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10755..12020
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BFE7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50161.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_102_000M1_scaffold_2843_14
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12089..13345)
DNA (1257bp) protein (419aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CFG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32661.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_102_000M1_scaffold_2843_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13490..14719
DNA (1230bp) protein (410aa)
hydroxypyruvate reductase (EC:1.1.1.81)
Hydroxypyruvate reductase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9U3_9FIRM
Hydroxypyruvate reductase {ECO:0000313|EMBL:EGJ47121.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_102_000M1_scaffold_2843_16
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14810..16777
DNA (1968bp) protein (656aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
fructose-1,6-bisphosphatase (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2J1_9CLOT
L3_102_000M1_scaffold_2843_17
unknown

Not on your lists

17046..17615
DNA (570bp) protein (190aa)

This feature has no annotations

L3_102_000M1_scaffold_2843_18
unknown

Not on your lists

17643..18722
DNA (1080bp) protein (360aa)

This feature has no annotations

L3_102_000M1_scaffold_2843_19
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(18733..19893)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IE54_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY40360.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L3_102_000M1_scaffold_2843_20
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19933..20439)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B507_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50393.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
dUTP pyrophosphatase
L3_102_000M1_scaffold_2843_21
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20628..21395)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W3J1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY97434.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
L3_102_000M1_scaffold_2843_22
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21411..21740)
DNA (330bp) protein (110aa)
Uncharacterized protein {ECO:0000313|EMBL:KJJ71364.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
L3_102_000M1_scaffold_2843_23
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21740..22729)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EJ43_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ56618.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
hypothetical protein
L3_102_000M1_scaffold_2843_24
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22916..23911
DNA (996bp) protein (332aa)
ocd; ornithine cyclodeaminase Ocd (EC:4.3.1.12)
Ornithine cyclodeaminase Ocd {ECO:0000313|EMBL:AFS77656.1}; EC=4.3.1.12 {ECO:0000313|EMBL:AFS77656.1};; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
Ornithine cyclodeaminase Ocd n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZ34_CLOA9
L3_102_000M1_scaffold_2843_25
unknown

Not on your lists

comp(23894..24100)
DNA (207bp) protein (69aa)

This feature has no annotations

Displaying 25 items

View Taxonomy