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L3_102_000M1_scaffold_1415

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_1415_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(85..516)
DNA (432bp) protein (144aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FUM4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23491.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_000M1_scaffold_1415_2
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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778..2118
DNA (1341bp) protein (447aa)
GTPase Der n=1 Tax=Clostridium sp. CAG:138 RepID=R6BBV0_9CLOT
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
engA; GTP-binding protein EngA
L3_102_000M1_scaffold_1415_3
unknown

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comp(2025..2213)
DNA (189bp) protein (63aa)

This feature has no annotations

L3_102_000M1_scaffold_1415_4
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2229..3704
DNA (1476bp) protein (492aa)
Stage IV sporulation protein A {ECO:0000256|PIRNR:PIRNR007466}; EC=3.6.1.3 {ECO:0000256|PIRNR:PIRNR007466};; Coat morphogenetic protein SpoIVA {ECO:0000256|PIRNR:PIRNR007466}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Stage IV sporulation protein A n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2C3_9CLOT
hypothetical protein
L3_102_000M1_scaffold_1415_5
Lysinibacillus sp. 13S34_air, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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5007..6269
DNA (1263bp) protein (421aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1461583 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus sp. 13S34_air.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB id=4745854 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA-i(6)A37 thiotransferase enzyme MiaB
L3_102_000M1_scaffold_1415_6
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6288..6686
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5ANQ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX42417.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
hypothetical protein
L3_102_000M1_scaffold_1415_7
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6730..9348
DNA (2619bp) protein (873aa)
DNA mismatch repair protein MutS n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2J3_9CLOT
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
DNA mismatch repair protein MutS
L3_102_000M1_scaffold_1415_8
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9363..11405
DNA (2043bp) protein (681aa)
DNA mismatch repair protein MutL n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9D7_9CLOT
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
DNA mismatch repair protein MutL
L3_102_000M1_scaffold_1415_9
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11407..12357
DNA (951bp) protein (317aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
tRNA dimethylallyltransferase n=1 Tax=Clostridium sp. CAG:138 RepID=R6AYV2_9CLOT
tRNA delta(2)-isopentenylpyrophosphate transferase
L3_102_000M1_scaffold_1415_10
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12361..12603
DNA (243bp) protein (81aa)
RNA-binding protein Hfq n=1 Tax=Clostridium tunisiense RepID=UPI0002F83D1C
hypothetical protein
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_102_000M1_scaffold_1415_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12604..13881
DNA (1278bp) protein (426aa)
Aluminum resistance family protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5K7_9CLOT
Aluminum resistance family protein {ECO:0000313|EMBL:CCX49479.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
cystathionine beta-lyase family protein
L3_102_000M1_scaffold_1415_12
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13888..14508)
DNA (621bp) protein (207aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
LexA repressor n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2I8_9CLOT
XRE family transcriptional regulator
L3_102_000M1_scaffold_1415_13
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

14675..15019
DNA (345bp) protein (115aa)
Putative uncharacterized protein id=2021241 bin=GWB2_Clostridiales_37_7 species=Desulfitobacterium metallireducens genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWB2_Clostridiales_37_7_curated
L3_102_000M1_scaffold_1415_14
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15016..16062)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDI8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49476.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Site-specific recombinase XerD
L3_102_000M1_scaffold_1415_15
Lysinibacillus massiliensis, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(16204..16887)
DNA (684bp) protein (228aa)
cro regulatory protein n=1 Tax=Bacillus massiliosenegalensis RepID=UPI00030E102E
Transcriptional regulator {ECO:0000313|EMBL:KGR91029.1}; TaxID=1211035 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529.;"
HipB; putative transcriptional regulator
L3_102_000M1_scaffold_1415_16
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17111..18388)
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B513_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49304.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_102_000M1_scaffold_1415_17
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18469..19407)
DNA (939bp) protein (313aa)
carbamate kinase (EC:2.7.2.2)
Carbamate kinase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B284_9CLOT
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_102_000M1_scaffold_1415_18
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19468..19911)
DNA (444bp) protein (148aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
Ribonuclease H (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Clostridium sp. CAG:138 RepID=R6ALB5_9CLOT
L3_102_000M1_scaffold_1415_19
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20096..21028)
DNA (933bp) protein (311aa)
Renal dipeptidase family protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BEJ7_9CLOT
Renal dipeptidase family protein {ECO:0000313|EMBL:CCX51277.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Zn-dependent dipeptidase, microsomal dipeptidase
L3_102_000M1_scaffold_1415_20
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21093..22634)
DNA (1542bp) protein (514aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
metal dependent phosphohydrolase (EC:3.1.4.16)
Ribonuclease Y n=1 Tax=Clostridium sp. CAG:226 RepID=R5BIJ5_9CLOT
L3_102_000M1_scaffold_1415_21
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22868..23890)
DNA (1023bp) protein (341aa)
Protein RecA n=1 Tax=Clostridium sp. CAG:226 RepID=R5B366_9CLOT
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
recA protein
L3_102_000M1_scaffold_1415_22
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23937..25199)
DNA (1263bp) protein (421aa)
Putative competence-damage inducible protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B695_9CLOT
Putative competence-damage inducible protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
competence damage-inducible protein A
L3_102_000M1_scaffold_1415_23
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25216..25776)
DNA (561bp) protein (187aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AQ46_9CLOT
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Tax=BJP_IG2157_Clostridiales_52_13
L3_102_000M1_scaffold_1415_24
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25773..27071)
DNA (1299bp) protein (433aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Clostridium sp. CAG:138 RepID=R6AWX0_9CLOT
MiaB-like tRNA modifying enzyme YliG
L3_102_000M1_scaffold_1415_25
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27073..29685)
DNA (2613bp) protein (871aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B371_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49733.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
DNA segregation ATPase FtsK
L3_102_000M1_scaffold_1415_26
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

30131..31012
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y5Q3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF68711.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
Displaying 26 items

View Taxonomy