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L3_102_000M1_scaffold_857

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_857_1
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(68..802)
DNA (735bp) protein (245aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B6N4_9CLOT
L3_102_000M1_scaffold_857_2
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(828..1949)
DNA (1122bp) protein (374aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9I4_9CLOT
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CCX50939.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_102_000M1_scaffold_857_3
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1946..2377)
DNA (432bp) protein (144aa)
Sporulation protein YtfJ n=1 Tax=Clostridium sp. CAG:138 RepID=R6BIT7_9CLOT
Sporulation protein YtfJ {ECO:0000313|EMBL:CDA53287.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
sporulation protein YtfJ
L3_102_000M1_scaffold_857_4
unknown

Not on your lists

comp(2364..2918)
DNA (555bp) protein (185aa)

This feature has no annotations

L3_102_000M1_scaffold_857_5
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2949..3497)
DNA (549bp) protein (183aa)
Segregation and condensation protein B n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDM2_9CLOT
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
chromosome segregation and condensation protein ScpB
L3_102_000M1_scaffold_857_6
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3510..4271)
DNA (762bp) protein (254aa)
Segregation and condensation protein A n=1 Tax=Clostridium sp. CAG:226 RepID=R5B6P0_9CLOT
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
scpA; segregation and condensation protein A
L3_102_000M1_scaffold_857_7
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4273..4953)
DNA (681bp) protein (227aa)
Putative zinc metalloprotease n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9I9_9CLOT
Putative zinc metalloprotease {ECO:0000313|EMBL:CCX50944.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
peptidase M50
L3_102_000M1_scaffold_857_8
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5025..5330)
DNA (306bp) protein (102aa)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Clostridium sp. CAG:354 RepID=R7FA82_9CLOT
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CDE11378.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
L3_102_000M1_scaffold_857_9
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5296..6111)
DNA (816bp) protein (272aa)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B1C1_9CLOT
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CCX49350.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
D-alanyl-D-alanine carboxypeptidase
L3_102_000M1_scaffold_857_10
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6184..7356)
DNA (1173bp) protein (391aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase n=1 Tax=Clostridium sp. CAG:226 RepID=R5BD55_9CLOT
L3_102_000M1_scaffold_857_11
unknown

Not on your lists

comp(7429..7938)
DNA (510bp) protein (170aa)

This feature has no annotations

L3_102_000M1_scaffold_857_12
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(8017..8802)
DNA (786bp) protein (262aa)
Putative sporulation transcription factor Spo0A n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IGD0_9FIRM
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
stage 0 sporulation protein A
L3_102_000M1_scaffold_857_13
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8906..10144)
DNA (1239bp) protein (413aa)
stage IV sporulation protein B (EC:3.4.21.116)
Peptidase S55 sporulation stage IV protein B n=1 Tax=Clostridium sp. CAG:226 RepID=R5B250_9CLOT
Peptidase S55 sporulation stage IV protein B {ECO:0000313|EMBL:CCX49353.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_102_000M1_scaffold_857_14
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10227..11918)
DNA (1692bp) protein (564aa)
DNA repair protein RecN n=1 Tax=Clostridium sp. CAG:226 RepID=R5B567_9CLOT
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
DNA repair protein RecN
L3_102_000M1_scaffold_857_15
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11936..12388)
DNA (453bp) protein (151aa)
Arginine repressor n=1 Tax=Clostridium sp. CAG:226 RepID=R5B1C5_9CLOT
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
argR; arginine repressor
L3_102_000M1_scaffold_857_16
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12477..13298)
DNA (822bp) protein (274aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
NAD(+) kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Clostridium sp. CAG:226 RepID=R5BD59_9CLOT
L3_102_000M1_scaffold_857_17
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13478..14284)
DNA (807bp) protein (269aa)
Hemolysin TlyA family protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B911_9CLOT
Hemolysin TlyA family protein {ECO:0000313|EMBL:CCX49357.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
tlyA; hemolysin TlyA family protein TlyA
L3_102_000M1_scaffold_857_18
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14281..16119)
DNA (1839bp) protein (613aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B256_9CLOT
deoxyxylulose-5-phosphate synthase
L3_102_000M1_scaffold_857_19
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16147..17031)
DNA (885bp) protein (295aa)
farnesyl-diphosphate synthase (EC:2.5.1.10)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B572_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49359.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_102_000M1_scaffold_857_20
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17035..17238)
DNA (204bp) protein (68aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Clostridium sp. CAG:138 RepID=R6ASS5_9CLOT
exodeoxyribonuclease VII small subunit
L3_102_000M1_scaffold_857_21
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17220..18458)
DNA (1239bp) protein (413aa)
Exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit n=1 Tax=Clostridium sp. CAG:440 RepID=R7GAW2_9CLOT
Tax=BJP_IG2157_Clostridiales_52_13
L3_102_000M1_scaffold_857_22
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18451..19299)
DNA (849bp) protein (283aa)
5,10-methylene-tetrahydrofolate dehydrogenase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Exiguobacterium pavilionensis RW-2 RepID=U1MZ16_9BACL
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
L3_102_000M1_scaffold_857_23
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19434..19853)
DNA (420bp) protein (140aa)
N utilization substance protein B homolog n=1 Tax=Clostridium sp. CAG:226 RepID=R5B577_9CLOT
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
antitermination factor NusB
L3_102_000M1_scaffold_857_24
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19875..20093)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AK61_9CLOT
putative membrane protein
Tax=BJP_IG2157_Clostridiales_52_13
L3_102_000M1_scaffold_857_25
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20120..20680)
DNA (561bp) protein (187aa)
Tax=BJP_08E140C01_Clostridiales_46_19
L3_102_000M1_scaffold_857_26
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20729..21160)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B921_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49367.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
alkaline shock protein
L3_102_000M1_scaffold_857_27
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21261..21770)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B266_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49368.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
stage III sporulation protein AH
L3_102_000M1_scaffold_857_28
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21775..22335)
DNA (561bp) protein (187aa)
Sporulation stage III protein AG n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AFA2_9CLOT
Sporulation stage III protein AG {ECO:0000313|EMBL:CCX41965.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
sporulation stage III protein AG
L3_102_000M1_scaffold_857_29
unknown

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comp(22325..22513)
DNA (189bp) protein (63aa)

This feature has no annotations

L3_102_000M1_scaffold_857_30
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22515..23645)
DNA (1131bp) protein (377aa)
Stage III sporulation protein AE n=1 Tax=Clostridium sp. CAG:226 RepID=R5BD74_9CLOT
Stage III sporulation protein AE {ECO:0000313|EMBL:CCX49371.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
sporulation protein 3AE
Displaying items 1-30 of 58 in total

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