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L3_102_000M1_scaffold_969

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_969_1
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..175)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CAK2_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENZ19606.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_102_000M1_scaffold_969_2
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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349..1341
DNA (993bp) protein (331aa)
UDP-galactose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EIJ8_9FIRM
UDP-glucose 4-epimerase {ECO:0000313|EMBL:CCX91139.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
L3_102_000M1_scaffold_969_3
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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1353..2465
DNA (1113bp) protein (371aa)
Galactokinase (EC:2.7.1.6)
GHMP kinase N-terminal domain protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IT06_9FIRM
GHMP kinase N-terminal domain protein {ECO:0000313|EMBL:CCY39866.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L3_102_000M1_scaffold_969_4
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3255..4883)
DNA (1629bp) protein (543aa)
Uncharacterized protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KWE6_OSCVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL00767.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_102_000M1_scaffold_969_5
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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5281..6549
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5RXH7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ45915.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
L3_102_000M1_scaffold_969_6
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6630..7331)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AGH8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX41903.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
amino acid ABC transporter ATP-binding protein
L3_102_000M1_scaffold_969_7
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7324..8163)
DNA (840bp) protein (280aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AJ92_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCX41904.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
branched-chain amino acid ABC transporter ATP-binding protein
L3_102_000M1_scaffold_969_8
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8163..9203)
DNA (1041bp) protein (347aa)
Amino acid or sugar ABC transport system permease protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AF46_9CLOT
Amino acid or sugar ABC transport system permease protein {ECO:0000313|EMBL:CCX41905.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-)
L3_102_000M1_scaffold_969_9
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9217..10104)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5ART7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX41906.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
amino acid/amide ABC transporter membrane protein 1, HAAT family (TC 3.A.1.4.-)
L3_102_000M1_scaffold_969_10
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10187..11386)
DNA (1200bp) protein (400aa)
Tat pathway signal sequence domain protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B505_9CLOT
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:CCX49294.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ABC-type branched-chain amino acid transport systems, periplasmic component
L3_102_000M1_scaffold_969_11
unknown

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comp(11468..11674)
DNA (207bp) protein (69aa)

This feature has no annotations

L3_102_000M1_scaffold_969_12
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11963..12277
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B383_9CLOT
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_102_000M1_scaffold_969_13
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12345..14420
DNA (2076bp) protein (692aa)
Peptidase U32 family n=1 Tax=Clostridium sp. CAG:138 RepID=R6AYQ2_9CLOT
Peptidase U32 family {ECO:0000313|EMBL:CDA51731.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
peptidase U32 family protein
L3_102_000M1_scaffold_969_14
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14435..16795
DNA (2361bp) protein (787aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Endonuclease MutS2 n=1 Tax=Clostridium sp. CAG:226 RepID=R5BA57_9CLOT
MutS2 family protein
L3_102_000M1_scaffold_969_15
Listeria fleischmannii, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16874..17338
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Listeria fleischmannii LU2006-1 RepID=M3J4Z7_9LIST
Uncharacterized protein {ECO:0000313|EMBL:EMG27817.1}; TaxID=1214117 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria fleischmannii LU2006-1.;"
hypothetical protein
L3_102_000M1_scaffold_969_16
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17361..18041
DNA (681bp) protein (227aa)
Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AI40_9CLOT
Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain {ECO:0000313|EMBL:CCX42523.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
two component transcriptional regulator, winged helix family
L3_102_000M1_scaffold_969_17
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18071..19540
DNA (1470bp) protein (490aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B6A7_9CLOT
integral membrane sensor signal transduction histidine kinase
L3_102_000M1_scaffold_969_18
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19558..20967
DNA (1410bp) protein (470aa)
HtrA2 peptidase (EC:3.4.21.108)
HtrA2 peptidase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B378_9CLOT
HtrA2 peptidase {ECO:0000313|EMBL:CCX49743.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_102_000M1_scaffold_969_19
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21124..23196
DNA (2073bp) protein (691aa)
Translation elongation factor G n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AGI4_9CLOT
Translation elongation factor G {ECO:0000313|EMBL:CCX42415.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
translation elongation factor 2 (EF-2/EF-G)
L3_102_000M1_scaffold_969_20
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24290..25159
DNA (870bp) protein (290aa)
Transcriptional regulator RpiR family n=1 Tax=Clostridium sp. CAG:226 RepID=R5BBY9_9CLOT
Transcriptional regulator RpiR family {ECO:0000313|EMBL:CCX50367.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
RpiR family transcriptional regulator
L3_102_000M1_scaffold_969_21
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25156..26376
DNA (1221bp) protein (407aa)
HI0933 family protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B469_9CLOT
HI0933 family protein {ECO:0000313|EMBL:CCX50365.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
flavoprotein, HI0933 family
L3_102_000M1_scaffold_969_22
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26394..27077
DNA (684bp) protein (228aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7X4_9CLOT
L3_102_000M1_scaffold_969_23
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27077..27667
DNA (591bp) protein (197aa)
plsC; 1-acylglycerol-3-phosphate O-acyltransferase (EC:2.3.1.51)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B4X3_9CLOT
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:CCX50363.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_102_000M1_scaffold_969_24
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27664..29895
DNA (2232bp) protein (744aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|SAAS:SAAS00096570};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain-containing protein (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Clostridium sp. CAG:226 RepID=R5BBY3_9CLOT
L3_102_000M1_scaffold_969_25
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(29994..31676)
DNA (1683bp) protein (561aa)
Resolvase, N-terminal domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y5V2_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EEF68663.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_102_000M1_scaffold_969_26
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(31766..31942)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y5V1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF68662.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L3_102_000M1_scaffold_969_27
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32371..32598)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CBX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI81523.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_102_000M1_scaffold_969_28
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32591..33142)
DNA (552bp) protein (184aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BTL2_9CLOT
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ERI81524.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
sigma-70, region 4 family
Displaying 28 items

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