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L3_102_000M1_scaffold_5498

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_5498_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..105)
DNA (105bp) protein (35aa)
Two-component system, OmpR family, phosphate regulon response regulator (Fragment) n=1 Tax=human gut metagenome RepID=K1UA80_9ZZZZ
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL12428.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_000M1_scaffold_5498_2
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(193..672)
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Roseburia sp. CAG:380 RepID=R6VLG7_9FIRM
conserved hypothetical protein TIGR00246
L3_102_000M1_scaffold_5498_3
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(751..1098)
DNA (348bp) protein (116aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
mRNA interferase n=1 Tax=Roseburia sp. CAG:380 RepID=R6V9Y5_9FIRM
transcriptional modulator of MazE/toxin MazF
L3_102_000M1_scaffold_5498_4
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1278..2450)
DNA (1173bp) protein (391aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Roseburia sp. CAG:380 RepID=R6WLS1_9FIRM
L3_102_000M1_scaffold_5498_5
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2517..4064)
DNA (1548bp) protein (516aa)
YjeF domain protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VSI0_9FIRM
YjeF domain protein {ECO:0000313|EMBL:CDC95051.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
carbohydrate kinase
L3_102_000M1_scaffold_5498_6
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4115..4528)
DNA (414bp) protein (138aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237180};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Holo-[acyl-carrier-protein] synthase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VLG0_9FIRM
Holo-(acyl-carrier-protein) synthase
L3_102_000M1_scaffold_5498_7
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4518..5183)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V9Y3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC95048.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_5498_8
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5380..6606
DNA (1227bp) protein (409aa)
UDP-N-acetylglucosamine pyrophosphorylase n=1 Tax=Roseburia sp. CAG:380 RepID=R6WLR5_9FIRM
UDP-N-acetylglucosamine pyrophosphorylase {ECO:0000313|EMBL:CDC95047.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
UDP-N-acetylglucosamine pyrophosphorylase
L3_102_000M1_scaffold_5498_9
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6804..7013)
DNA (210bp) protein (70aa)
hemN2; oxygen-independent coproporphyrinogen III oxidase HemN2 (EC:1.3.99.22)
Putative coproporphyrinogen dehydrogenase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VSH8_9FIRM
Putative coproporphyrinogen dehydrogenase {ECO:0000313|EMBL:CDC95046.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Displaying 9 items

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