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L3_102_000M1_scaffold_1303

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_1303_1
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..155
DNA (153bp) protein (51aa)
3-2-5-bisphosphate nucleotidase (EC:3.1.3.7)
Inositol monophosphatase n=1 Tax=Roseburia sp. CAG:380 RepID=R6V372_9FIRM
Inositol monophosphatase {ECO:0000313|EMBL:CDC92578.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_1303_2
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

224..1702
DNA (1479bp) protein (493aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WEG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC92577.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_1303_3
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2044..2961
DNA (918bp) protein (306aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Clostridium sp. CAG:277 RepID=R7K3V8_9CLOT
L3_102_000M1_scaffold_1303_4
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3084..3953
DNA (870bp) protein (290aa)
UPF0042 nucleotide-binding protein BN635_00845 n=1 Tax=Roseburia sp. CAG:380 RepID=R6V360_9FIRM
Nucleotide-binding protein BN635_00845 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Predicted P-loop-containing kinase
L3_102_000M1_scaffold_1303_5
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3969..4931
DNA (963bp) protein (321aa)
Putative sporulation transcription regulator WhiA n=1 Tax=Roseburia sp. CAG:380 RepID=R6WEF7_9FIRM
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_1303_6
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4963..5223
DNA (261bp) protein (87aa)
Phosphocarrier protein HPr n=1 Tax=Roseburia sp. CAG:380 RepID=R6VE21_9FIRM
Phosphocarrier protein HPr {ECO:0000313|EMBL:CDC92559.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
phosphotransferase system, phosphocarrier protein HPr
L3_102_000M1_scaffold_1303_7
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5296..8754
DNA (3459bp) protein (1153aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WEF3_9FIRM
L3_102_000M1_scaffold_1303_8
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8910..9887
DNA (978bp) protein (326aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Roseburia sp. CAG:380 RepID=R6V6E1_9FIRM
L3_102_000M1_scaffold_1303_9
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9914..10162
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VE17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC92554.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_1303_10
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10239..10883
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V350_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC92553.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
nucleoside recognition domain containing protein
L3_102_000M1_scaffold_1303_11
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10918..13068
DNA (2151bp) protein (717aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WEE9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC92552.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Rhs element Vgr family protein
L3_102_000M1_scaffold_1303_12
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13168..14115
DNA (948bp) protein (316aa)
Putative sporulation integral membrane protein YlbJ n=1 Tax=Roseburia sp. CAG:380 RepID=R6VK24_9FIRM
Putative sporulation integral membrane protein YlbJ {ECO:0000313|EMBL:CDC92551.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
nucleoside recognition domain-containing protein
L3_102_000M1_scaffold_1303_13
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14294..15301
DNA (1008bp) protein (336aa)
Zinc dependent phospholipase C n=1 Tax=Roseburia sp. CAG:380 RepID=R6V6D7_9FIRM
Zinc dependent phospholipase C {ECO:0000313|EMBL:CDC92550.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_1303_14
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15319..16698
DNA (1380bp) protein (460aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Aspartyl aminopeptidase (EC:3.4.11.-)
M18 family aminopeptidase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VE15_9FIRM
L3_102_000M1_scaffold_1303_15
unknown

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16691..16879
DNA (189bp) protein (63aa)

This feature has no annotations

L3_102_000M1_scaffold_1303_16
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17069..17428
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V343_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC92543.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_1303_17
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17476..19152
DNA (1677bp) protein (559aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WEE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC92542.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Dak phosphatase
L3_102_000M1_scaffold_1303_18
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19175..21214
DNA (2040bp) protein (680aa)
ATP-dependent DNA helicase RecG n=1 Tax=Roseburia sp. CAG:380 RepID=R6V6D1_9FIRM
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:CDC92540.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
ATP-dependent DNA helicase RecG
L3_102_000M1_scaffold_1303_19
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21386..22522
DNA (1137bp) protein (379aa)
prephenate dehydratase (EC:4.2.1.51)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V339_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC92538.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_1303_20
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22539..24338
DNA (1800bp) protein (600aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Clostridium sp. CAG:277 RepID=R7K3U1_9CLOT
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CDE70518.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
tRNA (uracil-5-) -methyltransferase
L3_102_000M1_scaffold_1303_21
Butyrivibrio sp. CAG:318, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24374..25267
DNA (894bp) protein (298aa)
inorganic pyrophosphatase n=1 Tax=Butyrivibrio sp. AE3009 RepID=UPI0003B66F9A
Predicted transcriptional regulator {ECO:0000313|EMBL:CDC39708.1}; TaxID=1262761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio sp. CAG:318.;"
MutT/NUDIX family protein
L3_102_000M1_scaffold_1303_22
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25289..25984
DNA (696bp) protein (232aa)
S-adenosylmethionine-dependent methyltransferase n=1 Tax=Lachnospiraceae bacterium NK4A179 RepID=UPI0003B51D98
Uncharacterized protein {ECO:0000313|EMBL:CCZ05151.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
type 11 methyltransferase
L3_102_000M1_scaffold_1303_23
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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26458..26814
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BG82_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM63293.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
Bacterial mobilisation protein (MobC).
L3_102_000M1_scaffold_1303_24
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27046..27282
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WSB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX73520.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
L3_102_000M1_scaffold_1303_25
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27356..27451
DNA (96bp) protein (32aa)
Helix-turn-helix n=1 Tax=Eubacterium sp. CAG:38 RepID=R7H962_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL25959.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Displaying 25 items

View Taxonomy