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L3_102_000M1_scaffold_1690

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_1690_1
unknown

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comp(2..130)
DNA (129bp) protein (43aa)

This feature has no annotations

L3_102_000M1_scaffold_1690_2
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(297..3458)
DNA (3162bp) protein (1054aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Isoleucine--tRNA ligase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VXC6_9FIRM
ileS; isoleucyl-tRNA synthetase
L3_102_000M1_scaffold_1690_3
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3867..4211)
DNA (345bp) protein (115aa)
Toxin-antitoxin system antitoxin component Xre family n=1 Tax=Roseburia sp. CAG:380 RepID=R6VEC0_9FIRM
Toxin-antitoxin system antitoxin component Xre family {ECO:0000313|EMBL:CDC96643.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
XRE family transcriptional regulator
L3_102_000M1_scaffold_1690_4
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4602..5018
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WRB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96642.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_1690_5
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5031..5516
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VXC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96641.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_1690_6
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5531..5875
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VI74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96640.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_1690_7
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5980..6345
DNA (366bp) protein (122aa)
Transcriptional regulator PadR family n=1 Tax=Roseburia sp. CAG:380 RepID=R6VQT0_9FIRM
Transcriptional regulator PadR family {ECO:0000313|EMBL:CDC96639.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Predicted transcriptional regulators
L3_102_000M1_scaffold_1690_8
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6507..7790)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VXA6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96626.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_1690_9
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7877..8575)
DNA (699bp) protein (233aa)
ABC-type antimicrobial peptide transport system ATPase component n=1 Tax=Roseburia sp. CAG:380 RepID=R6VI62_9FIRM
ABC-type antimicrobial peptide transport system ATPase component {ECO:0000313|EMBL:CDC96625.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_102_000M1_scaffold_1690_10
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8576..10252)
DNA (1677bp) protein (559aa)
Efflux transporter RND family MFP subunit n=1 Tax=Roseburia sp. CAG:380 RepID=R6VQS2_9FIRM
Efflux transporter RND family MFP subunit {ECO:0000313|EMBL:CDC96624.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_1690_11
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10451..11527
DNA (1077bp) protein (359aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VEA2_9FIRM
L3_102_000M1_scaffold_1690_12
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11527..11703
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WR97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96622.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_1690_13
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11840..12283)
DNA (444bp) protein (148aa)
GCN5-related N-acetyltransferase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VXA1_9FIRM
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:CDC96621.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
N-acetyltransferase GCN5
L3_102_000M1_scaffold_1690_14
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12386..14158)
DNA (1773bp) protein (591aa)
Methyl-accepting chemotaxis protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VI58_9FIRM
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDC96620.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
methyl-accepting chemotaxis protein
L3_102_000M1_scaffold_1690_15
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14327..15928
DNA (1602bp) protein (534aa)
Peptidoglycan-binding LysM n=1 Tax=Clostridium sp. CAG:277 RepID=R7K2Z9_9CLOT
Peptidoglycan-binding LysM {ECO:0000313|EMBL:CDE69387.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
peptidoglycan-binding LysM
L3_102_000M1_scaffold_1690_16
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16099..17124)
DNA (1026bp) protein (342aa)
branched-chain amino acid aminotransferase, group II (EC:2.6.1.42)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WR95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96617.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_1690_17
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17250..17678)
DNA (429bp) protein (143aa)
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose 5-phosphate isomerase B n=1 Tax=Roseburia sp. CAG:380 RepID=R6VX97_9FIRM
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:CDC96616.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_1690_18
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17675..18190)
DNA (516bp) protein (172aa)
Protein-tyrosine-phosphatase (EC:3.1.3.48)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VE93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96613.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_1690_19
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18214..19269)
DNA (1056bp) protein (352aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WR90_9FIRM
Sua5/YciO/YrdC/YwlC family protein
L3_102_000M1_scaffold_1690_20
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19270..19977)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VX92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96611.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
cell wall hydrolase/autolysin
L3_102_000M1_scaffold_1690_21
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20049..21773)
DNA (1725bp) protein (575aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VI52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96610.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_1690_22
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22019..22249)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VE88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96608.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Displaying 22 items

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