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L3_102_000M1_scaffold_1812

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_1812_1
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..201)
DNA (201bp) protein (67aa)
iscS; Cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase NifS n=1 Tax=Roseburia sp. CAG:380 RepID=R6WMF7_9FIRM
Cysteine desulfurase NifS {ECO:0000313|EMBL:CDC95302.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_1812_2
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

302..2005
DNA (1704bp) protein (568aa)
Polysaccharide biosynthesis protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VAK1_9FIRM
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:CDC95303.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
polysaccharide biosynthesis protein
L3_102_000M1_scaffold_1812_3
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1950..2336)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VM19_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC95304.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_1812_4
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2475..4175)
DNA (1701bp) protein (567aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K2P1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE70108.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
hydrogenase, Fe-only
L3_102_000M1_scaffold_1812_5
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4214..6103)
DNA (1890bp) protein (630aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WMG4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC95307.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_1812_6
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6093..6605)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VAK6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC95308.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
NADH dehydrogenase (ubiquinone), 24 kDa subunit
L3_102_000M1_scaffold_1812_7
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6913..7857)
DNA (945bp) protein (315aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VM22_9FIRM
L3_102_000M1_scaffold_1812_8
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7951..9906)
DNA (1956bp) protein (652aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VDW4_9FIRM
L3_102_000M1_scaffold_1812_9
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9951..10658)
DNA (708bp) protein (236aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
ribosomal large subunit pseudouridine synthase F (EC:5.4.99.12 5.4.99.-)
Pseudouridine synthase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VT50_9FIRM
L3_102_000M1_scaffold_1812_10
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10751..11419)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WMH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC95312.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_1812_11
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11808..12305)
DNA (498bp) protein (166aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VAL2_9FIRM
L3_102_000M1_scaffold_1812_12
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12412..13335)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VM25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC95314.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_1812_13
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13952..16252)
DNA (2301bp) protein (767aa)
Aconitate hydratase domain protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VDW8_9FIRM
Aconitate hydratase domain protein {ECO:0000313|EMBL:CDC95315.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_1812_14
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16479..17402
DNA (924bp) protein (308aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VT55_9FIRM
L3_102_000M1_scaffold_1812_15
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17396..17821
DNA (426bp) protein (142aa)
Aspartate transcarbamylase regulatory subunit n=1 Tax=Roseburia sp. CAG:380 RepID=R6WMH6_9FIRM
Aspartate transcarbamylase regulatory subunit {ECO:0000313|EMBL:CDC95317.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
aspartate carbamoyltransferase
L3_102_000M1_scaffold_1812_16
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17928..19076)
DNA (1149bp) protein (383aa)
Fibronectin type III domain protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VAL8_9FIRM
Fibronectin type III domain protein {ECO:0000313|EMBL:CDC95318.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_1812_17
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19168..19587)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VM30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC95319.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_1812_18
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19803..20336
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K244_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE70299.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
response regulator of the LytR/AlgR family
L3_102_000M1_scaffold_1812_19
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20395..21132
DNA (738bp) protein (246aa)
Integral membrane protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VDX2_9FIRM
Integral membrane protein {ECO:0000313|EMBL:CDC95320.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
Displaying 19 items

View Taxonomy