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L3_102_000M1_scaffold_242

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_242_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..966)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC15_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77309.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Plasmid recombination enzyme.
L3_102_000M1_scaffold_242_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1091..1327)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PP01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK45866.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_102_000M1_scaffold_242_3
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1285..1515)
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=E5XIB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18949.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L3_102_000M1_scaffold_242_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1679..1966
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CT49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31471.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_102_000M1_scaffold_242_5
unknown

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1957..2274
DNA (318bp) protein (106aa)

This feature has no annotations

L3_102_000M1_scaffold_242_6
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2181..3368)
DNA (1188bp) protein (396aa)
Elongation factor Tu n=1 Tax=Roseburia sp. CAG:380 RepID=R6VHZ5_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
TufB; GTPase
L3_102_000M1_scaffold_242_7
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3518..5635)
DNA (2118bp) protein (706aa)
Elongation factor G n=1 Tax=Roseburia sp. CAG:380 RepID=R6WR32_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
elongation factor G
L3_102_000M1_scaffold_242_8
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5660..6130)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=2 Tax=Clostridiales RepID=R6VX34_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
30S ribosomal protein S7
L3_102_000M1_scaffold_242_9
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6286..6699)
DNA (414bp) protein (138aa)
30S ribosomal protein S12 n=2 Tax=Clostridiales RepID=R6VHZ0_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
SSU ribosomal protein S12P
L3_102_000M1_scaffold_242_10
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6882..8045)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VQM3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96539.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_242_11
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8158..9459)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VQL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96534.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
peptidoglycan-binding LysM
L3_102_000M1_scaffold_242_12
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9691..10305
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VE23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96533.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
sporulation protein YyaC
L3_102_000M1_scaffold_242_13
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10246..10842)
DNA (597bp) protein (199aa)
Recombination protein RecR n=1 Tax=Roseburia sp. CAG:380 RepID=R6WR20_9FIRM
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
recombination protein RecR
L3_102_000M1_scaffold_242_14
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10919..11269)
DNA (351bp) protein (117aa)
Nucleoid-associated protein BN635_00449 n=1 Tax=Roseburia sp. CAG:380 RepID=R6VX24_9FIRM
Nucleoid-associated protein BN635_00449 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_242_15
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11288..12859)
DNA (1572bp) protein (524aa)
DNA polymerase III, subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III subunits gamma and tau n=1 Tax=Roseburia sp. CAG:380 RepID=R6VE16_9FIRM
DNA polymerase III subunits gamma and tau {ECO:0000313|EMBL:CDC96528.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_242_16
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12924..13997)
DNA (1074bp) protein (358aa)
6-phosphofructokinase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VHX5_9FIRM
6-phosphofructokinase 2 {ECO:0000313|EMBL:CDC96525.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
phosphofructokinase
L3_102_000M1_scaffold_242_17
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14045..14251)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VQL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96524.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_242_18
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14261..16501)
DNA (2241bp) protein (747aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Phosphorylase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VE11_9FIRM
4-alpha-glucanotransferase
L3_102_000M1_scaffold_242_19
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16772..18565)
DNA (1794bp) protein (598aa)
L-fucose isomerase {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040911}; Short=FucIase {ECO:0000256|HAMAP-Rule:MF_01254};; EC=5.3.1.25 {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040955};; 6-deoxy-L-galactose isomerase {ECO:0000256|HAMAP-Rule:MF_01254}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L-fucose isomerase (EC:5.3.1.25)
L-fucose isomerase n=1 Tax=Roseburia sp. CAG:380 RepID=R6WR07_9FIRM
L3_102_000M1_scaffold_242_20
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18716..19426)
DNA (711bp) protein (237aa)
Peptidase membrane zinc metallopeptidase putative n=1 Tax=Roseburia sp. CAG:380 RepID=R6VX17_9FIRM
Peptidase membrane zinc metallopeptidase putative {ECO:0000313|EMBL:CDC96521.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
putative Zn-dependent protease
L3_102_000M1_scaffold_242_21
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19552..20754)
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VHX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96520.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_242_22
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20780..21922)
DNA (1143bp) protein (381aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Roseburia sp. CAG:380 RepID=R6WR00_9FIRM
L3_102_000M1_scaffold_242_23
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22154..22582)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VHW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96515.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L3_102_000M1_scaffold_242_24
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22629..23813)
DNA (1185bp) protein (395aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=1 Tax=Roseburia sp. CAG:380 RepID=R6VE02_9FIRM
L3_102_000M1_scaffold_242_25
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24144..24554)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VX09_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96511.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_242_26
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24609..26744)
DNA (2136bp) protein (712aa)
Glycosidases (EC:3.2.1.20)
Putative neopullulanase 1 n=1 Tax=Roseburia sp. CAG:380 RepID=R6VQJ6_9FIRM
Putative neopullulanase 1 {ECO:0000313|EMBL:CDC96504.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_242_27
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26895..28334)
DNA (1440bp) protein (480aa)
uncharacterized domain HDIG (EC:2.7.7.72 3.1.3.- 3.1.4.-)
tRNA nucleotidyltransferase (CCA-adding enzyme) n=1 Tax=Roseburia sp. CAG:380 RepID=R6VWZ9_9FIRM
tRNA nucleotidyltransferase (CCA-adding enzyme) {ECO:0000313|EMBL:CDC96501.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_242_28
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28358..32431)
DNA (4074bp) protein (1358aa)
Putative ATP synthase F0 A subunit n=1 Tax=Roseburia sp. CAG:380 RepID=R6VHU1_9FIRM
Putative ATP synthase F0 A subunit {ECO:0000313|EMBL:CDC96500.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Cation/multidrug efflux pump
L3_102_000M1_scaffold_242_29
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32434..32892)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VDZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC96498.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_242_30
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33077..34126)
DNA (1050bp) protein (350aa)
Uncharacterized proteins homologs of microcin C7 resistance protein MccF n=1 Tax=Roseburia sp. CAG:380 RepID=R6VWY9_9FIRM
Uncharacterized proteins homologs of microcin C7 resistance protein MccF {ECO:0000313|EMBL:CDC96496.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Uncharacterized proteins, homologs of microcin C7 resistance protein MccF
Displaying items 1-30 of 67 in total

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