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L3_102_000M1_scaffold_409

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_409_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..651)
DNA (651bp) protein (217aa)
Methyl-accepting chemotaxis protein n=2 Tax=Roseburia intestinalis RepID=D4KTG4_9FIRM
Methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CBL10166.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_102_000M1_scaffold_409_2
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1120..1833)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V5T7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC92390.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_102_000M1_scaffold_409_3
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1826..3799)
DNA (1974bp) protein (658aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Osmosensitive K+ channel histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VJG4_9FIRM
L3_102_000M1_scaffold_409_4
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3907..4554)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WDW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC92397.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
K+ transport systems, NAD-binding component
L3_102_000M1_scaffold_409_5
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4574..5911)
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VDJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC92399.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Trk-type K+ transport systems, membrane components
L3_102_000M1_scaffold_409_6
unknown

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comp(5918..6115)
DNA (198bp) protein (66aa)

This feature has no annotations

L3_102_000M1_scaffold_409_7
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6221..8590)
DNA (2370bp) protein (790aa)
Putative cohesin domain protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V901_9FIRM
Putative cohesin domain protein {ECO:0000313|EMBL:CDC94728.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_409_8
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8587..11832)
DNA (3246bp) protein (1082aa)
Putative cohesin domain protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V901_9FIRM
Putative cohesin domain protein {ECO:0000313|EMBL:CDC94728.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_409_9
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12074..12343)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V905_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC94733.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_409_10
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12464..12949)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VRL3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC94741.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
FlgN protein.
L3_102_000M1_scaffold_409_11
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12970..13350)
DNA (381bp) protein (127aa)
Flagellar protein FliS n=1 Tax=Roseburia sp. CAG:380 RepID=R6WKR5_9FIRM
Flagellar protein FliS {ECO:0000313|EMBL:CDC94742.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
flagellar biosynthetic protein FliS
L3_102_000M1_scaffold_409_12
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13450..15567)
DNA (2118bp) protein (706aa)
Flagellar hook-associated 2 domain protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VKE6_9FIRM
Flagellar hook-associated 2 domain protein {ECO:0000313|EMBL:CDC94744.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
flagellar hook-associated 2 domain-containing protein
L3_102_000M1_scaffold_409_13
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15594..16013)
DNA (420bp) protein (140aa)
Flagellar protein FlaG protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WKS0_9FIRM
Flagellar protein FlaG protein {ECO:0000313|EMBL:CDC94747.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
flagellar protein FlaG protein
L3_102_000M1_scaffold_409_14
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16120..16347)
DNA (228bp) protein (76aa)
Carbon storage regulator homolog n=1 Tax=Roseburia sp. CAG:380 RepID=R6VKF0_9FIRM
Carbon storage regulator homolog {ECO:0000256|HAMAP-Rule:MF_00167, ECO:0000256|SAAS:SAAS00093889}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
carbon storage regulator CsrA
L3_102_000M1_scaffold_409_15
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16360..16797)
DNA (438bp) protein (146aa)
Flagellar assembly factor FliW n=1 Tax=Roseburia sp. CAG:380 RepID=R6VRL9_9FIRM
Flagellar assembly factor FliW {ECO:0000256|HAMAP-Rule:MF_01185}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_409_16
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16884..18416)
DNA (1533bp) protein (511aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V920_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC94753.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
flagellar hook-associated protein 3
L3_102_000M1_scaffold_409_17
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18438..20384)
DNA (1947bp) protein (649aa)
Flagellar hook-associated protein FlgK n=1 Tax=Roseburia sp. CAG:380 RepID=R6VC82_9FIRM
Flagellar hook-associated protein FlgK {ECO:0000313|EMBL:CDC94755.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
flagellar hook-associated protein FlgK
L3_102_000M1_scaffold_409_18
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20395..22311)
DNA (1917bp) protein (639aa)
Flagellar hook-associated protein FlgK n=1 Tax=Roseburia sp. CAG:380 RepID=R6WKT0_9FIRM
Flagellar hook-associated protein FlgK {ECO:0000313|EMBL:CDC94757.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
flagellar hook-associated protein FlgK
L3_102_000M1_scaffold_409_19
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22430..22945)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VKF9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC94759.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_409_20
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22965..23243)
DNA (279bp) protein (93aa)
Anti-sigma-28 factor FlgM n=1 Tax=Roseburia sp. CAG:380 RepID=R6V927_9FIRM
Anti-sigma-28 factor FlgM {ECO:0000313|EMBL:CDC94763.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
anti-sigma-28 factor FlgM
L3_102_000M1_scaffold_409_21
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23372..24628)
DNA (1257bp) protein (419aa)
Diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Roseburia sp. CAG:380 RepID=R6WKT6_9FIRM
Diaminopimelate decarboxylase {ECO:0000313|EMBL:CDC94767.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_409_22
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24837..26852
DNA (2016bp) protein (672aa)
DNA topoisomerase (EC:5.99.1.3)
DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Roseburia sp. CAG:380 RepID=R6V932_9FIRM
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000313|EMBL:CDC94768.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_409_23
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26867..29125
DNA (2259bp) protein (753aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
DNA topoisomerase (EC:5.99.1.3)
DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clostridium sp. CAG:277 RepID=R7K4N0_9CLOT
L3_102_000M1_scaffold_409_24
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29197..30075)
DNA (879bp) protein (293aa)
Transcriptional regulator n=1 Tax=Roseburia sp. CAG:380 RepID=R6VC98_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDC94770.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Transcriptional regulator
L3_102_000M1_scaffold_409_25
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30087..31028)
DNA (942bp) protein (314aa)
Thiamine pyrophosphate enzyme C-terminal TPP binding domain protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VRN3_9FIRM
Thiamine pyrophosphate enzyme C-terminal TPP binding domain protein {ECO:0000313|EMBL:CDC94776.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
PorB; pyruvate:ferredoxin oxidoreductase
L3_102_000M1_scaffold_409_26
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31080..32258)
DNA (1179bp) protein (393aa)
pyruvate ferredoxin oxidoreductase, alpha subunit (EC:1.2.7.1)
Pyruvate ferredoxin oxidoreductase alpha subunit n=1 Tax=Roseburia sp. CAG:380 RepID=R6V939_9FIRM
Pyruvate ferredoxin oxidoreductase alpha subunit {ECO:0000313|EMBL:CDC94778.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_409_27
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32248..32610)
DNA (363bp) protein (121aa)
2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family (EC:1.2.7.1)
Pyruvate/2-ketoisovalerate family acceptor oxidoreductase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VCA8_9FIRM
Pyruvate/2-ketoisovalerate family acceptor oxidoreductase {ECO:0000313|EMBL:CDC94780.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_409_28
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32665..33270)
DNA (606bp) protein (202aa)
pyruvate ferredoxin oxidoreductase, gamma subunit (EC:1.2.7.1)
Pyruvate/2-ketoisovalerate family acceptor oxidoreductase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VRN6_9FIRM
Pyruvate/2-ketoisovalerate family acceptor oxidoreductase {ECO:0000313|EMBL:CDC94781.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_409_29
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33582..34019
DNA (438bp) protein (146aa)
Uncharacterized conserved protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WKU8_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CDC94782.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_409_30
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34039..35298
DNA (1260bp) protein (420aa)
Alpha-galactosidase n=1 Tax=Roseburia sp. CAG:380 RepID=R6V946_9FIRM
Alpha-galactosidase {ECO:0000313|EMBL:CDC94783.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Alpha-galactosidase
Displaying items 1-30 of 44 in total

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