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L3_102_000M1_scaffold_428

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_428_1
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

385..1221
DNA (837bp) protein (279aa)
Polysaccharide deacetylase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VT59_9FIRM
Polysaccharide deacetylase {ECO:0000313|EMBL:CDC95321.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
polysaccharide deacetylase
L3_102_000M1_scaffold_428_2
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1297..2976)
DNA (1680bp) protein (560aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Roseburia sp. CAG:380 RepID=R6WMI1_9FIRM
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CDC95322.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
diguanylate cyclase (GGDEF) domain
L3_102_000M1_scaffold_428_3
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3191..4513
DNA (1323bp) protein (441aa)
Transporter n=1 Tax=Roseburia sp. CAG:380 RepID=R6VAM4_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
neurotransmitter:Na+ symporter, NSS family
L3_102_000M1_scaffold_428_4
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4776..5408)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VM34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC95324.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
thiamine pyrophosphokinase
L3_102_000M1_scaffold_428_5
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5452..6297)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VT64_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC95326.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_428_6
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6287..6946)
DNA (660bp) protein (220aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Ribulose-phosphate 3-epimerase n=1 Tax=Roseburia sp. CAG:380 RepID=R6WMI8_9FIRM
ribulose-phosphate 3-epimerase
L3_102_000M1_scaffold_428_7
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6979..7869)
DNA (891bp) protein (297aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Roseburia sp. CAG:380 RepID=R6VAN0_9FIRM
L3_102_000M1_scaffold_428_8
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7866..9929)
DNA (2064bp) protein (688aa)
Serine/threonine protein kinase with PASTA sensor(S) n=1 Tax=Roseburia sp. CAG:380 RepID=R6VM38_9FIRM
Serine/threonine protein kinase with PASTA sensor(S) {ECO:0000313|EMBL:CDC95329.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
serine/threonine protein kinase with PASTA sensor(s)
L3_102_000M1_scaffold_428_9
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9944..10663)
DNA (720bp) protein (240aa)
Protein phosphatase 2C n=1 Tax=Roseburia sp. CAG:380 RepID=R6VDX9_9FIRM
Protein phosphatase 2C {ECO:0000313|EMBL:CDC95330.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Ser/Thr phosphatase
L3_102_000M1_scaffold_428_10
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10818..11846)
DNA (1029bp) protein (343aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Roseburia sp. CAG:380 RepID=R6VT70_9FIRM
L3_102_000M1_scaffold_428_11
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11846..13273)
DNA (1428bp) protein (476aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
ribosomal RNA small subunit methyltransferase RsmB (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Roseburia sp. CAG:380 RepID=R6WMJ4_9FIRM
L3_102_000M1_scaffold_428_12
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13379..14314)
DNA (936bp) protein (312aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Methionyl-tRNA formyltransferase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VAN6_9FIRM
methionyl-tRNA formyltransferase
L3_102_000M1_scaffold_428_13
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14337..14819)
DNA (483bp) protein (161aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Peptide deformylase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VM45_9FIRM
def; peptide deformylase
L3_102_000M1_scaffold_428_14
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14857..17091)
DNA (2235bp) protein (745aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Primosomal protein N n=1 Tax=Roseburia sp. CAG:380 RepID=R6VDY3_9FIRM
primosomal protein N (replication factor Y) - superfamily II helicase
L3_102_000M1_scaffold_428_15
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17106..18575)
DNA (1470bp) protein (490aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VT77_9FIRM
hypothetical protein
L3_102_000M1_scaffold_428_16
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18595..19449)
DNA (855bp) protein (285aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Diaminopimelate epimerase n=1 Tax=Roseburia sp. CAG:380 RepID=R6WMK1_9FIRM
DapF; diaminopimelate epimerase
L3_102_000M1_scaffold_428_17
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19575..20210)
DNA (636bp) protein (212aa)
Heavy metal response regulator n=1 Tax=Roseburia sp. CAG:380 RepID=R6VAP1_9FIRM
Heavy metal response regulator {ECO:0000313|EMBL:CDC95338.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
transcriptional regulator
L3_102_000M1_scaffold_428_18
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20170..21306)
DNA (1137bp) protein (379aa)
iron-only hydrogenase maturation protein HydE (EC:2.8.1.6)
Iron-only hydrogenase maturation protein HydE n=1 Tax=Roseburia sp. CAG:380 RepID=R6VM49_9FIRM
Iron-only hydrogenase maturation protein HydE {ECO:0000313|EMBL:CDC95339.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_428_19
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21343..21939)
DNA (597bp) protein (199aa)
Transcriptional regulator TetR family n=1 Tax=Roseburia sp. CAG:380 RepID=R6VDY8_9FIRM
Transcriptional regulator TetR family {ECO:0000313|EMBL:CDC95340.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Transcriptional regulator
L3_102_000M1_scaffold_428_20
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22001..24331)
DNA (2331bp) protein (777aa)
Gram-positive signal peptide protein YSIRK family n=1 Tax=Roseburia sp. CAG:380 RepID=R6VT81_9FIRM
Gram-positive signal peptide protein YSIRK family {ECO:0000313|EMBL:CDC95341.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_428_21
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24360..26474)
DNA (2115bp) protein (705aa)
Predicted exporters of the RND superfamily n=1 Tax=Roseburia sp. CAG:380 RepID=R6WMK7_9FIRM
Predicted exporters of the RND superfamily {ECO:0000313|EMBL:CDC95342.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Predicted exporters of the RND superfamily
L3_102_000M1_scaffold_428_22
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26726..28810)
DNA (2085bp) protein (695aa)
Molecular chaperone HSP90 family n=1 Tax=Roseburia sp. CAG:380 RepID=R6VAP7_9FIRM
Molecular chaperone HSP90 family {ECO:0000313|EMBL:CDC95343.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
heat shock protein 90
L3_102_000M1_scaffold_428_23
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29015..29722)
DNA (708bp) protein (236aa)
Bacterial group 2 Ig-like protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VM53_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:CDC95344.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Bacterial surface proteins containing Ig-like domains
L3_102_000M1_scaffold_428_24
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29788..30879)
DNA (1092bp) protein (364aa)
UDP-galactopyranose mutase (EC:5.4.99.9)
UDP-galactopyranose mutase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VDZ5_9FIRM
UDP-galactopyranose mutase {ECO:0000313|EMBL:CDC95345.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_428_25
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30951..32666)
DNA (1716bp) protein (572aa)
Glycosyltransferase group 2 family protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JXE2_9CLOT
Glycosyltransferase group 2 family protein {ECO:0000313|EMBL:CDE68243.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
glycosyl transferase 2
L3_102_000M1_scaffold_428_26
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32699..33625)
DNA (927bp) protein (309aa)
Glycosyltransferase n=1 Tax=Clostridium sp. CAG:277 RepID=R7JZM1_9CLOT
Glycosyltransferase {ECO:0000313|EMBL:CDE68242.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
family 2 glycosyl transferase
L3_102_000M1_scaffold_428_27
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33591..34820)
DNA (1230bp) protein (410aa)
Glycosyl transferase group 1 n=1 Tax=Clostridium sp. CAG:277 RepID=R7JX90_9CLOT
Glycosyl transferase group 1 {ECO:0000313|EMBL:CDE68241.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
group 1 glycosyl transferase
L3_102_000M1_scaffold_428_28
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34836..36266)
DNA (1431bp) protein (477aa)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VT88_9FIRM
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:CDC95351.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
L3_102_000M1_scaffold_428_29
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36327..37010)
DNA (684bp) protein (228aa)
Transcriptional regulator GntR family n=1 Tax=Clostridium sp. CAG:277 RepID=R7JWC7_9CLOT
Transcriptional regulator GntR family {ECO:0000313|EMBL:CDE68239.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
GntR family transcriptional regulator
L3_102_000M1_scaffold_428_30
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37228..39156
DNA (1929bp) protein (643aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WML7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC95352.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
Displaying items 1-30 of 42 in total

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