ggKbase home page

L3_102_000M1_scaffold_787

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_787_1
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(229..1158)
DNA (930bp) protein (310aa)
Elongation factor Ts n=1 Tax=Roseburia sp. CAG:380 RepID=R6VNX5_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
translation elongation factor Ts (EF-Ts)
L3_102_000M1_scaffold_787_2
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1210..1932)
DNA (723bp) protein (241aa)
30S ribosomal protein S2 n=1 Tax=Roseburia sp. CAG:380 RepID=R6WPB7_9FIRM
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
SSU ribosomal protein S2P
L3_102_000M1_scaffold_787_3
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2203..3690)
DNA (1488bp) protein (496aa)
Threonine synthase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VIB7_9FIRM
Threonine synthase {ECO:0000313|EMBL:CDC91986.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
threonine synthase
L3_102_000M1_scaffold_787_4
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3852..4550)
DNA (699bp) protein (233aa)
Putative spore cortex-lytic enzyme n=1 Tax=Roseburia sp. CAG:380 RepID=R6VCF4_9FIRM
Putative spore cortex-lytic enzyme {ECO:0000313|EMBL:CDC91984.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
cell wall hydrolase SleB
L3_102_000M1_scaffold_787_5
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4763..5560)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VCE9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC91979.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_787_6
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5586..6080)
DNA (495bp) protein (165aa)
HAD superfamily (Subfamily IIIA) phosphatase TIGR01668 n=1 Tax=Roseburia sp. CAG:380 RepID=R6V1A2_9FIRM
HAD superfamily (Subfamily IIIA) phosphatase TIGR01668 {ECO:0000313|EMBL:CDC91978.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
L3_102_000M1_scaffold_787_7
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6091..6552)
DNA (462bp) protein (154aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Roseburia sp. CAG:380 RepID=R6WCP4_9FIRM
L3_102_000M1_scaffold_787_8
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6659..7861)
DNA (1203bp) protein (401aa)
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.99.12)
Riboflavin biosynthesis protein RibBA n=1 Tax=Roseburia sp. CAG:380 RepID=R6VCE4_9FIRM
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_787_9
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7885..8541)
DNA (657bp) protein (219aa)
riboflavin synthase, alpha subunit (EC:2.5.1.9)
Riboflavin synthase alpha subunit n=1 Tax=Roseburia sp. CAG:380 RepID=R6V4M5_9FIRM
Riboflavin synthase alpha subunit {ECO:0000313|EMBL:CDC91970.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_787_10
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8779..9873)
DNA (1095bp) protein (365aa)
diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Roseburia sp. CAG:380 RepID=R6V4M0_9FIRM
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_787_11
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9880..10554)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VCD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC91964.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_787_12
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10639..11199)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V182_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC91963.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_787_13
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11221..11976)
DNA (756bp) protein (252aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VI87_9FIRM
L3_102_000M1_scaffold_787_14
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12005..12505)
DNA (501bp) protein (167aa)
ATP:corrinoid adenosyltransferase (EC:2.5.1.17)
Putative cob(I)yrinic acid a c-diamide adenosyltransferase n=1 Tax=Roseburia sp. CAG:380 RepID=R6V4K7_9FIRM
Putative cob(I)yrinic acid a c-diamide adenosyltransferase {ECO:0000313|EMBL:CDC91955.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_787_15
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12641..13282)
DNA (642bp) protein (214aa)
Single-strand binding protein/Primosomal replication protein n n=1 Tax=Roseburia sp. CAG:380 RepID=R6VCC2_9FIRM
Single-strand binding protein/Primosomal replication protein n {ECO:0000313|EMBL:CDC91954.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
single-stranded DNA-binding protein
L3_102_000M1_scaffold_787_16
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13645..15483
DNA (1839bp) protein (613aa)
GTP-binding protein TypA n=1 Tax=Roseburia sp. CAG:380 RepID=R6V170_9FIRM
GTP-binding protein TypA {ECO:0000313|EMBL:CDC91953.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_787_17
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15508..16398)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6WCL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC91952.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_787_18
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16395..17786)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V4K1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC91950.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_787_19
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17819..18682)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V166_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC91948.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_787_20
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18709..19725)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K0S5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE69799.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
hypothetical protein
L3_102_000M1_scaffold_787_21
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19722..20129)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VI70_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC91941.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_787_22
unknown

Not on your lists

comp(20080..20265)
DNA (186bp) protein (62aa)

This feature has no annotations

L3_102_000M1_scaffold_787_23
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20383..21798)
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VCA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC91939.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_787_24
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21824..23521)
DNA (1698bp) protein (566aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V160_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC91938.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_102_000M1_scaffold_787_25
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23786..25081)
DNA (1296bp) protein (432aa)
phosphopyruvate hydratase (EC:4.2.1.11)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318, ECO:0000313|EMBL:CBL40175.1};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Enolase n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GQV0_9FIRM
L3_102_000M1_scaffold_787_26
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25344..26405)
DNA (1062bp) protein (354aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase n=1 Tax=Roseburia sp. CAG:380 RepID=R6WCJ7_9FIRM
Tryptophanyl-tRNA synthetase {ECO:0000313|EMBL:CDC91937.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_787_27
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26541..30047)
DNA (3507bp) protein (1169aa)
Carbohydrate binding family 6 n=1 Tax=Roseburia sp. CAG:380 RepID=R6VI63_9FIRM
Carbohydrate binding family 6 {ECO:0000313|EMBL:CDC91936.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
family 6 carbohydrate binding protein
L3_102_000M1_scaffold_787_28
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30230..31060
DNA (831bp) protein (277aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Roseburia sp. CAG:380 RepID=R6V4I1_9FIRM
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CDC91935.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
transcriptional regulator, AraC family
L3_102_000M1_scaffold_787_29
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31074..31739
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K493_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE69812.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
hypothetical protein
L3_102_000M1_scaffold_787_30
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31702..33390)
DNA (1689bp) protein (563aa)
Carbon starvation-induced protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V156_9FIRM
Carbon starvation-induced protein {ECO:0000313|EMBL:CDC91933.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
carbon starvation protein
Displaying items 1-30 of 33 in total

View Taxonomy