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L3_102_000M1_scaffold_0

Search features with annotation key words

Displaying items 1-30 of 263 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_0_1
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(87..800)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FV14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB12876.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
Bacterial Ig-like domain (group 2).
L3_102_000M1_scaffold_0_2
unknown

Not on your lists

comp(943..1227)
DNA (285bp) protein (95aa)

This feature has no annotations

L3_102_000M1_scaffold_0_3
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1293..2138)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FV14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB12876.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
Bacterial Ig-like domain (group 2).
L3_102_000M1_scaffold_0_4
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2258..2482
DNA (225bp) protein (75aa)
Predicted transcriptional regulators n=1 Tax=Coprococcus sp. CAG:131 RepID=R6L3T8_9FIRM
TWA4_scaffold00001, whole genome shotgun sequence {ECO:0000313|EMBL:KIR02310.1}; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
Predicted transcriptional regulators
L3_102_000M1_scaffold_0_5
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2839..2931)
DNA (93bp) protein (31aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FHY3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB12838.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
L3_102_000M1_scaffold_0_6
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3169..5514)
DNA (2346bp) protein (782aa)
E1-E2 ATPase n=1 Tax=Eubacterium sp. CAG:161 RepID=R5LBA1_9FIRM
E1-E2 ATPase {ECO:0000313|EMBL:CCY70277.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
ATPase, P-type (transporting), HAD superfamily, subfamily IC
L3_102_000M1_scaffold_0_7
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5601..6146)
DNA (546bp) protein (182aa)
UPF0340 protein BN525_00762 n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FLD7_9FIRM
UPF0340 protein BN525_00762 {ECO:0000256|HAMAP-Rule:MF_00800}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
hypothetical protein
L3_102_000M1_scaffold_0_8
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6177..6707)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FUY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB12841.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
Predicted membrane protein
L3_102_000M1_scaffold_0_9
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6888..8381)
DNA (1494bp) protein (498aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
Glycerol kinase n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z679_9FIRM
GlpK; glycerol kinase
L3_102_000M1_scaffold_0_10
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8633..9442)
DNA (810bp) protein (270aa)
Peptidase M23 family n=1 Tax=Eubacterium sp. CAG:161 RepID=R5L9A6_9FIRM
Peptidase M23 family {ECO:0000313|EMBL:CCY69876.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
hypothetical protein
L3_102_000M1_scaffold_0_11
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9507..10535)
DNA (1029bp) protein (343aa)
SpoIID/LytB domain protein n=1 Tax=Eubacterium sp. CAG:161 RepID=R5LA69_9FIRM
SpoIID/LytB domain protein {ECO:0000313|EMBL:CCY69877.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
SpoIID/LytB domain-containing protein
L3_102_000M1_scaffold_0_12
Lottia gigantea, Lottia, Gastropoda, Mollusca, Metazoa

Not on your lists

comp(10744..11298)
DNA (555bp) protein (185aa)
Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea RepID=V4AI47_LOTGI
Uncharacterized protein {ECO:0000313|EMBL:ESP03754.1}; Flags: Fragment;; TaxID=225164 species="Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Gastropoda; Patellogastropoda; Lottioidea; Lottiidae; Lottia.;" source="Lottia gigantea (Giant owl limpet).;"
L3_102_000M1_scaffold_0_13
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11455..12279
DNA (825bp) protein (275aa)
Conserved domain protein n=1 Tax=Eubacterium sp. CAG:192 RepID=R6GFG8_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CDB12997.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
hypothetical protein
L3_102_000M1_scaffold_0_14
unknown

Not on your lists

12338..12709
DNA (372bp) protein (124aa)

This feature has no annotations

L3_102_000M1_scaffold_0_15
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12835..15312)
DNA (2478bp) protein (826aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=1 Tax=Eubacterium sp. CAG:161 RepID=R5KXS3_9FIRM
L3_102_000M1_scaffold_0_16
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15401..18562)
DNA (3162bp) protein (1054aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FWB7_9FIRM
L3_102_000M1_scaffold_0_17
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18939..19127)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:161 RepID=R5KTR8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY70223.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
L3_102_000M1_scaffold_0_18
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19257..20027)
DNA (771bp) protein (257aa)
Cellulase (Glycosyl hydrolase family 5) n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FKP6_9FIRM
Cellulase (Glycosyl hydrolase family 5) {ECO:0000313|EMBL:CDB13858.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
L3_102_000M1_scaffold_0_19
unknown

Not on your lists

comp(20082..20231)
DNA (150bp) protein (50aa)

This feature has no annotations

L3_102_000M1_scaffold_0_20
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20265..28199)
DNA (7935bp) protein (2645aa)
Spore coat protein CotH n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FV85_9FIRM
Spore coat protein CotH {ECO:0000313|EMBL:CDB13329.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
glycosyl hydrolase family 16
L3_102_000M1_scaffold_0_21
unknown

Not on your lists

comp(28650..28790)
DNA (141bp) protein (47aa)

This feature has no annotations

L3_102_000M1_scaffold_0_22
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28899..29465)
DNA (567bp) protein (189aa)
Listeria/Bacterioides repeat n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FWC3_9FIRM
Listeria/Bacterioides repeat {ECO:0000313|EMBL:CDB13331.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
Fibronectin type III domain.
L3_102_000M1_scaffold_0_23
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29490..30035)
DNA (546bp) protein (182aa)
Putative glucan endo-1 3-beta-glucosidase A1 n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FJZ3_9FIRM
Putative glucan endo-1 3-beta-glucosidase A1 {ECO:0000313|EMBL:CDB13538.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
FMN-binding domain./Fibronectin type III domain./Iron Transport-associated domain.
L3_102_000M1_scaffold_0_24
unknown

Not on your lists

comp(29992..30318)
DNA (327bp) protein (109aa)

This feature has no annotations

L3_102_000M1_scaffold_0_25
Clostridium sp. CAG:264, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30517..31554)
DNA (1038bp) protein (346aa)
Integrase core domain protein n=1 Tax=Clostridium sp. CAG:264 RepID=R5K200_9CLOT
Integrase core domain protein {ECO:0000313|EMBL:CCY60703.1}; TaxID=1262786 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:264.;"
Transposase and inactivated derivatives, IS30 family
L3_102_000M1_scaffold_0_26
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31592..31849)
DNA (258bp) protein (86aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=N9X291_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ35066.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
hypothetical protein
L3_102_000M1_scaffold_0_27
Roseburia sp. CAG:471, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31976..32911
DNA (936bp) protein (312aa)
DNA polymerase III PolC-type (PolIII) (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:471 RepID=R7E9U3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD99495.1}; TaxID=1262948 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:471.;"
L3_102_000M1_scaffold_0_28
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32908..33210)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z5S7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD36241.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
XRE family transcriptional regulator
L3_102_000M1_scaffold_0_29
unknown

Not on your lists

comp(33159..33260)
DNA (102bp) protein (34aa)

This feature has no annotations

L3_102_000M1_scaffold_0_30
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33343..33471)
DNA (129bp) protein (43aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B3F9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCY42225.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Displaying items 1-30 of 263 in total

View Taxonomy