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L3_102_000M1_scaffold_519

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_519_1
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(769..1098)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FMM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB13275.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
L3_102_000M1_scaffold_519_2
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1127..1849)
DNA (723bp) protein (241aa)
RHS repeat-associated core domain protein n=1 Tax=Eubacterium sp. CAG:156 RepID=R5Z7K4_9FIRM
RHS repeat-associated core domain protein {ECO:0000313|EMBL:CDA30086.1}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
L3_102_000M1_scaffold_519_3
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1936..3774)
DNA (1839bp) protein (613aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5YYE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA31890.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
hypothetical protein
L3_102_000M1_scaffold_519_4
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4267..4821)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5ZAI6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM50087.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
Predicted metal-dependent hydrolase
L3_102_000M1_scaffold_519_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4821..5444)
DNA (624bp) protein (208aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CRP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31987.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_102_000M1_scaffold_519_6
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5830..7302)
DNA (1473bp) protein (491aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III polC-type n=1 Tax=Dorea sp. CAG:105 RepID=R5D6P9_9FIRM
DNA polymerase III polC-type {ECO:0000313|EMBL:CCX75873.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
L3_102_000M1_scaffold_519_7
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7718..8812)
DNA (1095bp) protein (365aa)
Elongation factor Ts n=2 Tax=root RepID=A5Z3L8_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
elongation factor EF-Ts
L3_102_000M1_scaffold_519_8

Not on your lists


comp(8839..9576)
DNA (738bp) protein (246aa)
30S ribosomal protein S2 n=2 Tax=root RepID=A5Z3L7_9FIRM
30S ribosomal protein S2 {ECO:0000313|EMBL:EKC56150.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
rpsB; 30S ribosomal protein S2
L3_102_000M1_scaffold_519_9
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9829..11901)
DNA (2073bp) protein (691aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FPP8_9FIRM
L3_102_000M1_scaffold_519_10
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11922..12836)
DNA (915bp) protein (305aa)
DNA protecting protein DprA n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z3L5_9FIRM
DNA protecting protein DprA {ECO:0000313|EMBL:EDM52505.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
DNA protecting protein DprA
L3_102_000M1_scaffold_519_11
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12833..14350)
DNA (1518bp) protein (506aa)
Mg chelatase-like protein n=1 Tax=Eubacterium sp. CAG:161 RepID=R5LBW2_9FIRM
Mg chelatase-like protein {ECO:0000313|EMBL:CCY70467.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
putative ATPase with chaperone activity
L3_102_000M1_scaffold_519_12
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14548..15168)
DNA (621bp) protein (207aa)
RNA polymerase sigma factor n=1 Tax=Eubacterium sp. CAG:161 RepID=R5KUG8_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
FliA/WhiG family RNA polymerase sigma factor
L3_102_000M1_scaffold_519_13
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15258..16490)
DNA (1233bp) protein (411aa)
Peptidase U32 family n=1 Tax=Eubacterium sp. CAG:161 RepID=R5KZF3_9FIRM
Peptidase U32 family {ECO:0000313|EMBL:CCY70469.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
protease
L3_102_000M1_scaffold_519_14
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16537..17181)
DNA (645bp) protein (215aa)
Methyltransferase domain protein n=1 Tax=Eubacterium sp. CAG:156 RepID=R5YZH3_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:CDA29889.1}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
O-methyltransferase
L3_102_000M1_scaffold_519_15
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17185..17583)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:161 RepID=R5LBB2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY70471.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
YceG-like family.
L3_102_000M1_scaffold_519_16
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17596..19257)
DNA (1662bp) protein (554aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FMW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB13355.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
beta-lactamase domain-containing protein
L3_102_000M1_scaffold_519_17
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19379..19648)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FWE5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB13356.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
hypothetical protein
L3_102_000M1_scaffold_519_18
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19680..20099)
DNA (420bp) protein (140aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
Putative Holliday junction resolvase n=1 Tax=Eubacterium sp. CAG:192 RepID=R6GGI9_9FIRM
conserved hypothetical protein TIGR00250
L3_102_000M1_scaffold_519_19
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20200..20493)
DNA (294bp) protein (98aa)
UPF0297 protein BN504_01396 n=1 Tax=Eubacterium sp. CAG:156 RepID=R5YZH8_9FIRM
UPF0297 protein BN504_01396 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
hypothetical protein
L3_102_000M1_scaffold_519_20
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20518..21813)
DNA (1296bp) protein (432aa)
tRNA methylthiotransferase YqeV n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FVB6_9FIRM
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:CDB13359.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
MiaB-like tRNA modifying enzyme
L3_102_000M1_scaffold_519_21
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21930..22160
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:161 RepID=R5LBX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY70477.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
PTS system phosphocarrier protein HPr
L3_102_000M1_scaffold_519_22
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22256..23434)
DNA (1179bp) protein (393aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
Probable tRNA sulfurtransferase n=1 Tax=Eubacterium sp. CAG:161 RepID=R5KUI0_9FIRM
thiazole biosynthesis/tRNA modification protein ThiI
L3_102_000M1_scaffold_519_23
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23453..24607)
DNA (1155bp) protein (385aa)
Aminotransferase class V n=1 Tax=Eubacterium sp. CAG:161 RepID=R5KZG5_9FIRM
Aminotransferase class V {ECO:0000313|EMBL:CCY70479.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
cysteine desulfurase
L3_102_000M1_scaffold_519_24
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24633..25370)
DNA (738bp) protein (246aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Eubacterium sp. CAG:161 RepID=R5KUF4_9FIRM
L3_102_000M1_scaffold_519_25
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25381..26334)
DNA (954bp) protein (318aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=4 Tax=root RepID=A5Z3J9_9FIRM
L3_102_000M1_scaffold_519_26
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26480..27643)
DNA (1164bp) protein (388aa)
Chaperone protein DnaJ n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z3J7_9FIRM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
chaperone protein DnaJ
L3_102_000M1_scaffold_519_27
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27792..29657)
DNA (1866bp) protein (622aa)
Chaperone protein DnaK n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FHH7_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
2-alkenal reductase
L3_102_000M1_scaffold_519_28
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29718..30332)
DNA (615bp) protein (205aa)
Protein GrpE n=1 Tax=Eubacterium sp. CAG:192 RepID=R6GEF7_9FIRM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
Molecular chaperone GrpE (heat shock protein)
L3_102_000M1_scaffold_519_29
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30353..31402)
DNA (1050bp) protein (350aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FUJ0_9FIRM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
heat-inducible transcriptional repressor
L3_102_000M1_scaffold_519_30
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31613..33004
DNA (1392bp) protein (464aa)
MATE efflux family protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z3J2_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EDM52482.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
putative efflux protein, MATE family
Displaying items 1-30 of 46 in total

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