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L3_102_000M1_scaffold_2018

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_2018_1
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..567)
DNA (567bp) protein (189aa)
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:EEG90704.1}; EC=2.4.-.- {ECO:0000313|EMBL:EEG90704.1};; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
Glycosyltransferase, group 1 family protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B711_9FIRM
Glycosyltransferase
L3_102_000M1_scaffold_2018_2
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(568..1716)
DNA (1149bp) protein (383aa)
Glycosyltransferase (EC:2.4.1.57)
Glycosyltransferase {ECO:0000313|EMBL:CBK90919.1}; EC=2.4.1.57 {ECO:0000313|EMBL:CBK90919.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Glycosyltransferase n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E679_9FIRM
L3_102_000M1_scaffold_2018_3
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1700..3148)
DNA (1449bp) protein (483aa)
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:CBK90016.1}; EC=2.7.8.6 {ECO:0000313|EMBL:CBK90016.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3M6_9FIRM
L3_102_000M1_scaffold_2018_4
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3473..4180)
DNA (708bp) protein (236aa)
HNH endonuclease n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3M5_9FIRM
HNH endonuclease.
HNH endonuclease {ECO:0000313|EMBL:CBK90015.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_102_000M1_scaffold_2018_5
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4164..5537)
DNA (1374bp) protein (458aa)
Predicted ATP-binding protein involved in virulence n=2 Tax=Eubacterium rectale RepID=D4JHP4_9FIRM
Predicted ATP-binding protein involved in virulence
Predicted ATP-binding protein involved in virulence {ECO:0000313|EMBL:CBK93141.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_102_000M1_scaffold_2018_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5682..7277)
DNA (1596bp) protein (532aa)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases (EC:1.3.99.22)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases {ECO:0000313|EMBL:CBK90013.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CBK90013.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3M3_9FIRM
L3_102_000M1_scaffold_2018_7
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7274..7903)
DNA (630bp) protein (210aa)
Zn-dependent hydrolases including glyoxylases n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TGV8_9FIRM
Zn-dependent hydrolases including glyoxylases {ECO:0000313|EMBL:CDC71485.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
hydroxyacylglutathione hydrolase
L3_102_000M1_scaffold_2018_8
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7959..10310)
DNA (2352bp) protein (784aa)
(P)ppGpp synthetase I, SpoT/RelA n=2 Tax=Eubacterium RepID=C4ZI23_EUBR3
(p)ppGpp synthetase I, SpoT/RelA
(P)ppGpp synthetase I, SpoT/RelA {ECO:0000313|EMBL:ACR76660.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_102_000M1_scaffold_2018_9
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10386..11330)
DNA (945bp) protein (315aa)
glucokinase (EC:2.7.1.2)
Glucokinase {ECO:0000313|EMBL:CBK90011.1}; EC=2.7.1.2 {ECO:0000313|EMBL:CBK90011.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Glucokinase n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3M1_9FIRM
L3_102_000M1_scaffold_2018_10
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11390..12352)
DNA (963bp) protein (321aa)
Acetyltransferases including N-acetylases of ribosomal proteins n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TDP7_9FIRM
Acetyltransferases including N-acetylases of ribosomal proteins {ECO:0000313|EMBL:CDC71508.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Acetyltransferases, including N-acetylases of ribosomal proteins
L3_102_000M1_scaffold_2018_11
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12352..12873)
DNA (522bp) protein (174aa)
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493, ECO:0000313|EMBL:CBK93146.1};; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Peptidyl-prolyl cis-trans isomerase n=4 Tax=Eubacterium RepID=C4ZI27_EUBR3
L3_102_000M1_scaffold_2018_12
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12979..14373)
DNA (1395bp) protein (465aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZI28_EUBR3
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
L3_102_000M1_scaffold_2018_13
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14375..15430)
DNA (1056bp) protein (352aa)
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
D-alanine--D-alanine ligase n=3 Tax=Bacteria RepID=D4JHQ1_9FIRM
L3_102_000M1_scaffold_2018_14
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15603..15860)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6UL88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC71522.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
hypothetical protein
L3_102_000M1_scaffold_2018_15
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16098..16511)
DNA (414bp) protein (138aa)
Transposase DDE domain n=2 Tax=Eubacterium rectale RepID=D6E3L6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR76669.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_102_000M1_scaffold_2018_16
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17205..17732)
DNA (528bp) protein (176aa)
Ribosome-associated protein Y (PSrp-1) n=4 Tax=Eubacterium RepID=C4ZI34_EUBR3
SSU ribosomal protein S30P/sigma 54 modulation protein
SSU ribosomal protein S30P/sigma 54 modulation protein {ECO:0000313|EMBL:CBK93150.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_102_000M1_scaffold_2018_17
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18016..20064)
DNA (2049bp) protein (683aa)
ATPase components of ABC transporters with duplicated ATPase domains n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3L4_9FIRM
ATPase components of ABC transporters with duplicated ATPase domains
ATPase components of ABC transporters with duplicated ATPase domains {ECO:0000313|EMBL:CBK90004.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_102_000M1_scaffold_2018_18
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20095..21399)
DNA (1305bp) protein (435aa)
Predicted ATPase (AAA+ superfamily) n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHQ5_9FIRM
Predicted ATPase (AAA+ superfamily)
Predicted ATPase (AAA+ superfamily) {ECO:0000313|EMBL:CBK93152.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_102_000M1_scaffold_2018_19
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21517..22839)
DNA (1323bp) protein (441aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZI37_EUBR3
hypothetical protein
L3_102_000M1_scaffold_2018_20
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22885..23553)
DNA (669bp) protein (223aa)
DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZI38_EUBR3
DNA-binding response regulator, OmpR family (Rec-wHTH domains)
DNA-binding response regulator, OmpR family (Rec-wHTH domains) {ECO:0000313|EMBL:ACR76675.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_102_000M1_scaffold_2018_21
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23730..24380)
DNA (651bp) protein (217aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3L0_9FIRM
phosphate uptake regulator, PhoU
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_102_000M1_scaffold_2018_22
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24380..25141)
DNA (762bp) protein (254aa)
phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Phosphate ABC transporter, ATP-binding protein n=3 Tax=Eubacterium RepID=C4ZI40_EUBR3
L3_102_000M1_scaffold_2018_23
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25234..26637)
DNA (1404bp) protein (468aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZI41_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR76678.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_102_000M1_scaffold_2018_24
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27126..28010
DNA (885bp) protein (295aa)
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Pyridoxal biosynthesis lyase PdxS n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZI43_EUBR3
pyridoxal biosynthesis lyase PdxS
L3_102_000M1_scaffold_2018_25
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28012..28602
DNA (591bp) protein (197aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Glutamine amidotransferase subunit PdxT n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZI44_EUBR3
glutamine amidotransferase subunit PdxT
L3_102_000M1_scaffold_2018_26
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28745..29086
DNA (342bp) protein (114aa)
Predicted nucleotidyltransferases n=2 Tax=Eubacterium RepID=D4JHR3_9FIRM
Predicted nucleotidyltransferases
Predicted nucleotidyltransferases {ECO:0000313|EMBL:CDC71554.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L3_102_000M1_scaffold_2018_27
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29300..31723)
DNA (2424bp) protein (808aa)
Signal transduction histidine kinase n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHR5_9FIRM
Signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:CBK93162.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_102_000M1_scaffold_2018_28
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31781..32470)
DNA (690bp) protein (230aa)
Two-component response regulator n=4 Tax=Eubacterium RepID=C4ZI46_EUBR3
two-component response regulator
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBK89993.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L3_102_000M1_scaffold_2018_29
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32733..33596)
DNA (864bp) protein (288aa)
Phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1) n=2 Tax=Eubacterium RepID=D4JHR7_9FIRM
phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)
Phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1) {ECO:0000313|EMBL:CBK93164.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_102_000M1_scaffold_2018_30
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33589..34491)
DNA (903bp) protein (301aa)
Phosphate ABC transporter, permease protein n=2 Tax=Eubacterium rectale RepID=C4ZI48_EUBR3
phosphate ABC transporter permease
Phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1) {ECO:0000313|EMBL:CBK89991.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Displaying items 1-30 of 32 in total

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