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L3_102_000M1_scaffold_1366

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_000M1_scaffold_1366_1
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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2..346
DNA (345bp) protein (115aa)
Helix-turn-helix n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5HAH5_9FIRM
Helix-turn-helix {ECO:0000313|EMBL:CCY21766.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
Helix-turn-helix.
L3_102_000M1_scaffold_1366_2
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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433..1491
DNA (1059bp) protein (353aa)
ORF6N domain n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3Z8_9FIRM
ORF6N domain.
ORF6N domain {ECO:0000313|EMBL:CBL25960.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_102_000M1_scaffold_1366_3
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1741..2070
DNA (330bp) protein (110aa)
ABC-type multidrug transport system, ATPase and permease components (EC:3.6.3.-)
ABC-type multidrug transport system ATPase and permease component n=1 Tax=Roseburia sp. CAG:380 RepID=R6VB28_9FIRM
ABC-type multidrug transport system ATPase and permease component {ECO:0000313|EMBL:CDC94360.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_102_000M1_scaffold_1366_4
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2166..2678
DNA (513bp) protein (171aa)
ABC-type multidrug transport system ATPase and permease component n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IIB2_9FIRM
ABC-type multidrug transport system ATPase and permease component {ECO:0000313|EMBL:CDE51058.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
ABC transporter
L3_102_000M1_scaffold_1366_5
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3081..5789
DNA (2709bp) protein (903aa)
Type III restriction enzyme, res subunit n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30425.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
type III restriction endonuclease subunit R
L3_102_000M1_scaffold_1366_6
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5985..6710
DNA (726bp) protein (242aa)
glucosamine-6-phosphate isomerase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Glucosamine-6-phosphate deaminase n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TWC6_9FIRM
L3_102_000M1_scaffold_1366_7
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6740..7894
DNA (1155bp) protein (385aa)
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
N-acetylglucosamine-6-phosphate deacetylase n=2 Tax=Eubacterium RepID=D4JHK1_9FIRM
L3_102_000M1_scaffold_1366_8
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7888..8367
DNA (480bp) protein (160aa)
PTS system IIA component, Glc family (TC 4.A.1) n=2 Tax=Eubacterium RepID=D4JHK0_9FIRM
PTS system IIA component, Glc family (TC 4.A.1)
PTS system IIA component, Glc family (TC 4.A.1) {ECO:0000313|EMBL:CBK93097.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_102_000M1_scaffold_1366_9
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8451..9920
DNA (1470bp) protein (490aa)
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2) n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3P3_9FIRM
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
PTS system N-acetylglucosamine-specific IIB component Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component Glc family (TC 4.A.1.1.2) {ECO:0000313|EMBL:CDC74104.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L3_102_000M1_scaffold_1366_10
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10875..12005
DNA (1131bp) protein (377aa)
Extracellular/cell surface DNA-entry nuclease n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZI14_EUBR3
extracellular/cell surface DNA-entry nuclease precursor
Extracellular/cell surface DNA-entry nuclease {ECO:0000313|EMBL:ACR76651.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_102_000M1_scaffold_1366_11
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12624..13883
DNA (1260bp) protein (420aa)
Histidine--tRNA ligase n=3 Tax=Eubacterium RepID=C4ZI13_EUBR3
histidine--tRNA ligase
Histidine--tRNA ligase {ECO:0000313|EMBL:CDC74100.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L3_102_000M1_scaffold_1366_12
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13972..15768
DNA (1797bp) protein (599aa)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:CBK93093.1}; EC=6.1.1.12 {ECO:0000313|EMBL:CBK93093.1};; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHJ6_9FIRM
L3_102_000M1_scaffold_1366_13
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15778..16818
DNA (1041bp) protein (347aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHJ5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK93092.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_102_000M1_scaffold_1366_14
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17260..18699)
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Sensory transduction histidine kinase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZI09_EUBR3
sensory transduction histidine kinase
L3_102_000M1_scaffold_1366_15
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18703..19404)
DNA (702bp) protein (234aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=4 Tax=Eubacterium RepID=D4JHJ3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR76645.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_102_000M1_scaffold_1366_16
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19456..21834)
DNA (2379bp) protein (793aa)
Endonuclease MutS2 {ECO:0000255|HAMAP-Rule:MF_00092}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00092};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Endonuclease MutS2 n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=MUTS2_EUBR3
DNA mismatch repair protein
L3_102_000M1_scaffold_1366_17
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22377..23645
DNA (1269bp) protein (423aa)
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHJ1_9FIRM
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain {ECO:0000313|EMBL:CBK93088.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L3_102_000M1_scaffold_1366_18
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23664..24608
DNA (945bp) protein (315aa)
HD-superfamily hydrolase n=3 Tax=Eubacterium RepID=C4ZI05_EUBR3
uncharacterized domain HDIG
HD-superfamily hydrolase {ECO:0000313|EMBL:CDC74071.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L3_102_000M1_scaffold_1366_19
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24718..26199
DNA (1482bp) protein (494aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA m(5)U-1939 methyltransferase {ECO:0000313|EMBL:CBK90043.1}; EC=2.1.1.- {ECO:0000313|EMBL:CBK90043.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3Q3_9FIRM
L3_102_000M1_scaffold_1366_20
unknown

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26285..26458
DNA (174bp) protein (58aa)

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Displaying 20 items

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