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L3_102_363G1_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 234 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_363G1_scaffold_2_1
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1..300
DNA (300bp) protein (100aa)
Integrase (Fragment) n=2 Tax=Coprobacillus RepID=E7GAI0_9FIRM
Integrase {ECO:0000313|EMBL:EFW04957.1}; Flags: Fragment;; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
Site-specific recombinase XerD
L3_102_363G1_scaffold_2_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(425..820)
DNA (396bp) protein (132aa)
Transcriptional regulator, GntR family n=2 Tax=Clostridium RepID=B6FSI9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24325.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted transcriptional regulators
L3_102_363G1_scaffold_2_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

995..1204
DNA (210bp) protein (70aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FSI8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24327.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_102_363G1_scaffold_2_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1221..1610
DNA (390bp) protein (130aa)
Transcriptional regulator, BlaI/MecI/CopY family n=2 Tax=Clostridium RepID=B6FSI7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24329.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
penicillinase repressor
L3_102_363G1_scaffold_2_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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1612..2202
DNA (591bp) protein (197aa)
Acetyltransferase, GNAT family n=2 Tax=Clostridium RepID=B6FSI6_9CLOT
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EEA81006.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
N-acetyltransferase GCN5
L3_102_363G1_scaffold_2_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2202..2672
DNA (471bp) protein (157aa)
Pyridoxamine 5'-phosphate oxidase family protein n=2 Tax=Clostridium RepID=B6FSI5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24331.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
5-nitroimidazole antibiotic resistance protein
L3_102_363G1_scaffold_2_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2688..4103
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QQV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24332.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
L3_102_363G1_scaffold_2_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4207..4908
DNA (702bp) protein (234aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FSI2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24334.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
putative ABC transporter ATP-binding protein
L3_102_363G1_scaffold_2_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4901..6526
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSI1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81001.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_102_363G1_scaffold_2_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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6544..7494
DNA (951bp) protein (317aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tRNA-dihydrouridine synthase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSI0_9CLOT
dihydrouridine synthase
L3_102_363G1_scaffold_2_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7534..8499)
DNA (966bp) protein (322aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PU99_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24339.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_363G1_scaffold_2_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8700..10943
DNA (2244bp) protein (748aa)
Tetratricopeptide repeat protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSH7_9CLOT
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EEA80997.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tetratricopeptide TPR_2 repeat protein
L3_102_363G1_scaffold_2_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10957..12525
DNA (1569bp) protein (523aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PUA6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24344.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Group I intron
L3_102_363G1_scaffold_2_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12567..12962)
DNA (396bp) protein (132aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FSH5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24348.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_363G1_scaffold_2_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13134..13829
DNA (696bp) protein (232aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PL98_9CLOT
L3_102_363G1_scaffold_2_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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13853..14404
DNA (552bp) protein (184aa)
Ribosome-recycling factor n=2 Tax=Clostridium RepID=B6FSH3_9CLOT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ribosome recycling factor
L3_102_363G1_scaffold_2_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14502..15215
DNA (714bp) protein (238aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
undecaprenyl diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase n=2 Tax=Clostridium RepID=B6FSH2_9CLOT
L3_102_363G1_scaffold_2_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15216..16019
DNA (804bp) protein (268aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
CDP-diglyceride synthetase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSH1_9CLOT
L3_102_363G1_scaffold_2_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16035..17177
DNA (1143bp) protein (381aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSH0_9CLOT
L3_102_363G1_scaffold_2_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17182..18210
DNA (1029bp) protein (343aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
RIP metalloprotease RseP n=2 Tax=Clostridium RepID=B6FSG9_9CLOT
RIP metalloprotease RseP
L3_102_363G1_scaffold_2_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18289..19554)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6QR01_9CLOT
Putative peptidoglycan binding domain protein {ECO:0000313|EMBL:EEA80988.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Putative peptidoglycan-binding domain-containing protein
L3_102_363G1_scaffold_2_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19632..20828
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSG7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80987.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Transglutaminase-like superfamily.
L3_102_363G1_scaffold_2_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20874..21548
DNA (675bp) protein (225aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FSG6_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:EEA80986.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
two component transcriptional regulator, winged helix family
L3_102_363G1_scaffold_2_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21545..22549
DNA (1005bp) protein (335aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUE6_9CLOT
signal transduction histidine kinase
L3_102_363G1_scaffold_2_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22564..23469
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PLD6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24385.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
endonuclease
L3_102_363G1_scaffold_2_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23619..24386
DNA (768bp) protein (256aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6Q0Z0_9CLOT
Putative bacteriocin export ABC transporter, lactococcin 972 group {ECO:0000313|EMBL:EEA81046.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
antimicrobial peptide ABC transporter ATPase
L3_102_363G1_scaffold_2_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24379..26346
DNA (1968bp) protein (656aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QR10_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24387.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
lipoprotein release ABC transporter permease
L3_102_363G1_scaffold_2_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26471..26815
DNA (345bp) protein (115aa)
Cupin domain protein n=2 Tax=Clostridium RepID=B6FSF9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24388.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_363G1_scaffold_2_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26880..27980)
DNA (1101bp) protein (367aa)
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase (EC:2.6.1.9)
Putative histidinol-phosphate transaminase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSF8_9CLOT
Putative histidinol-phosphate transaminase {ECO:0000313|EMBL:EEA81043.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_102_363G1_scaffold_2_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28089..31379
DNA (3291bp) protein (1097aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSF7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81042.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
Displaying items 1-30 of 234 in total

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