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L3_102_363G1_scaffold_25

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_363G1_scaffold_25_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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810..2957
DNA (2148bp) protein (716aa)
Methyl-accepting chemotaxis protein signaling domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAZ4_9FIRM
Methyl-accepting chemotaxis protein signaling domain protein {ECO:0000313|EMBL:EEV01018.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Methyl-accepting chemotaxis protein
L3_102_363G1_scaffold_25_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3114..3761
DNA (648bp) protein (216aa)
Sigma-70 region 2 n=2 Tax=Roseburia RepID=C7GAX2_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:EEV01140.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
RNA polymerase sigma factor, sigma-70 family
L3_102_363G1_scaffold_25_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3825..6020
DNA (2196bp) protein (732aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AXV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA53659.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats
L3_102_363G1_scaffold_25_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6312..7133
DNA (822bp) protein (274aa)
Esterase/lipase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6ARP4_9FIRM
Esterase/lipase {ECO:0000313|EMBL:CDA53660.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Esterase/lipase
L3_102_363G1_scaffold_25_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7138..8364)
DNA (1227bp) protein (409aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Tyrosine--tRNA ligase n=3 Tax=Roseburia intestinalis RepID=D4KK60_9FIRM
L3_102_363G1_scaffold_25_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8943..9431
DNA (489bp) protein (163aa)
RNA polymerase sigma factor sigma-70 family n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6ANN8_9FIRM
RNA polymerase sigma factor sigma-70 family {ECO:0000313|EMBL:CDA53663.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
RNA polymerase sigma factor, sigma-70 family
L3_102_363G1_scaffold_25_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9434..10864
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AXV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA53664.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_102_363G1_scaffold_25_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11064..11903
DNA (840bp) protein (280aa)
HAD-superfamily hydrolase, subfamily IIB n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KK65_9FIRM
HAD-superfamily hydrolase, subfamily IIB
HAD-superfamily hydrolase, subfamily IIB {ECO:0000313|EMBL:CBL10745.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_102_363G1_scaffold_25_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11979..12818
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6ARQ2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA53670.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_363G1_scaffold_25_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13004..13561
DNA (558bp) protein (186aa)
Uncharacterized conserved protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU42_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL10882.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_363G1_scaffold_25_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13656..14651
DNA (996bp) protein (332aa)
biotin synthase (EC:2.8.1.6)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Biotin synthase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU44_9FIRM
L3_102_363G1_scaffold_25_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14722..15405
DNA (684bp) protein (228aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
dethiobiotin synthase (EC:6.3.3.3)
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6ANP7_9FIRM
L3_102_363G1_scaffold_25_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15487..16677
DNA (1191bp) protein (397aa)
adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme (EC:2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme n=2 Tax=Roseburia RepID=D4KU46_9FIRM
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme {ECO:0000313|EMBL:CDA53674.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_363G1_scaffold_25_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16762..16977
DNA (216bp) protein (72aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GAV9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA53675.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_363G1_scaffold_25_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16981..19362)
DNA (2382bp) protein (794aa)
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit (EC:1.2.7.1)
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAV8_9FIRM
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein {ECO:0000313|EMBL:EEV01126.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_102_363G1_scaffold_25_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19362..20483)
DNA (1122bp) protein (374aa)
2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family (EC:1.2.7.1)
2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family {ECO:0000313|EMBL:CBL10754.1}; EC=1.2.7.1 {ECO:0000313|EMBL:CBL10754.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KK74_9FIRM
L3_102_363G1_scaffold_25_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20665..21792
DNA (1128bp) protein (376aa)
Transporter, YbiR family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU50_9FIRM
transporter, YbiR family
Transporter, YbiR family {ECO:0000313|EMBL:CBL10890.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_363G1_scaffold_25_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21811..22665
DNA (855bp) protein (285aa)
Permeases of the drug/metabolite transporter (DMT) superfamily n=2 Tax=Roseburia RepID=D4KK76_9FIRM
Permeases of the drug/metabolite transporter (DMT) superfamily
Permeases of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:CDA53679.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_102_363G1_scaffold_25_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23164..23991
DNA (828bp) protein (276aa)
Glycerophosphoryl diester phosphodiesterase (EC:3.1.4.46)
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:CBL10892.1}; EC=3.1.4.46 {ECO:0000313|EMBL:CBL10892.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU52_9FIRM
L3_102_363G1_scaffold_25_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23988..24974
DNA (987bp) protein (329aa)
Lysophospholipase (EC:3.1.1.5)
Lysophospholipase {ECO:0000313|EMBL:CBL10893.1}; EC=3.1.1.5 {ECO:0000313|EMBL:CBL10893.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Lysophospholipase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU53_9FIRM
L3_102_363G1_scaffold_25_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24971..26314
DNA (1344bp) protein (448aa)
Permeases of the major facilitator superfamily n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KK79_9FIRM
Permeases of the major facilitator superfamily
Permeases of the major facilitator superfamily {ECO:0000313|EMBL:CBL10759.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_102_363G1_scaffold_25_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26295..26990
DNA (696bp) protein (232aa)
RelA/SpoT domain protein n=2 Tax=Roseburia RepID=C7GAV0_9FIRM
RelA/SpoT domain protein {ECO:0000313|EMBL:EEV01118.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_102_363G1_scaffold_25_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27012..29081
DNA (2070bp) protein (690aa)
Polyphosphate kinase {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191}; EC=2.7.4.1 {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KK80_9FIRM
L3_102_363G1_scaffold_25_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29234..30247
DNA (1014bp) protein (338aa)
Putative Phosphate-binding protein PstS 2 n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAU8_9FIRM
Putative Phosphate-binding protein PstS 2 {ECO:0000313|EMBL:EEV01116.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)
L3_102_363G1_scaffold_25_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30383..31237
DNA (855bp) protein (285aa)
Phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1) n=4 Tax=Roseburia RepID=D4KK82_9FIRM
phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)
Phosphate ABC transporter, permease protein PstC {ECO:0000313|EMBL:EEV01115.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_102_363G1_scaffold_25_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31253..32146
DNA (894bp) protein (298aa)
Phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1) n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU57_9FIRM
phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)
Phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1) {ECO:0000313|EMBL:CBL10897.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_102_363G1_scaffold_25_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32160..32912
DNA (753bp) protein (251aa)
phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) n=4 Tax=Roseburia RepID=D4KK84_9FIRM
L3_102_363G1_scaffold_25_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32909..33661
DNA (753bp) protein (251aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU59_9FIRM
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
phosphate uptake regulator, PhoU
L3_102_363G1_scaffold_25_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33840..35600
DNA (1761bp) protein (587aa)
Na/Pi-cotransporter II-like protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAU3_9FIRM
Na/Pi-cotransporter II-like protein {ECO:0000313|EMBL:EEV01111.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Na/Pi-cotransporter
L3_102_363G1_scaffold_25_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35630..36301
DNA (672bp) protein (224aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Roseburia intestinalis RepID=D4KK87_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL10767.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Displaying items 1-30 of 118 in total

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