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L3_102_363G1_scaffold_55

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_363G1_scaffold_55_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(322..1608)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKR5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY34131.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_102_363G1_scaffold_55_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1975..2106)
DNA (132bp) protein (44aa)
Sporulation transcriptional regulator SpoIIID n=3 Tax=Lachnospiraceae RepID=A7B1D7_RUMGN
Sporulation transcriptional regulator SpoIIID {ECO:0000313|EMBL:EDN78059.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Stage III sporulation protein D.
L3_102_363G1_scaffold_55_3
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2623..2763)
DNA (141bp) protein (47aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B1D5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17911.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_102_363G1_scaffold_55_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3039..4718
DNA (1680bp) protein (560aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UF26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67447.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
cellulase
L3_102_363G1_scaffold_55_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4872..5843)
DNA (972bp) protein (324aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B1D1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43627.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
conserved hypothetical protein (putative transposase or invertase)
L3_102_363G1_scaffold_55_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6487..7317)
DNA (831bp) protein (277aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B1D0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43628.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_102_363G1_scaffold_55_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7603..8058)
DNA (456bp) protein (152aa)
Peroxiredoxin (EC:1.11.1.15)
Antioxidant, AhpC/TSA family n=3 Tax=Lachnospiraceae RepID=A7B1C8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17916.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_102_363G1_scaffold_55_8
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8105..9478)
DNA (1374bp) protein (458aa)
MATE efflux family protein n=3 Tax=Lachnospiraceae RepID=A7B1C7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43630.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
MATE efflux family protein
L3_102_363G1_scaffold_55_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9488..10360)
DNA (873bp) protein (291aa)
Aldose 1-epimerase n=3 Tax=Lachnospiraceae RepID=A7B1C6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43631.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Galactose mutarotase and related enzymes
L3_102_363G1_scaffold_55_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10472..11644)
DNA (1173bp) protein (391aa)
Trigger factor n=3 Tax=Clostridiales RepID=F7JTG1_9FIRM
Trigger factor {ECO:0000256|RuleBase:RU003914}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
trigger factor
L3_102_363G1_scaffold_55_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11782..13260)
DNA (1479bp) protein (493aa)
Cardiolipin synthase {ECO:0000256|HAMAP-Rule:MF_01916}; Short=CL synthase {ECO:0000256|HAMAP-Rule:MF_01916};; EC=2.7.8.- {ECO:0000256|HAMAP-Rule:MF_01916};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
cardiolipin synthetase 2 (EC:2.7.8.-)
Cardiolipin synthase n=2 Tax=Ruminococcus gnavus RepID=A7B1C4_RUMGN
L3_102_363G1_scaffold_55_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13420..13872
DNA (453bp) protein (151aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B1C3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43635.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Protein of unknown function (DUF1628).
L3_102_363G1_scaffold_55_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13919..14380)
DNA (462bp) protein (154aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B1C2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17922.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_102_363G1_scaffold_55_14
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14391..15221)
DNA (831bp) protein (277aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=4 Tax=Clostridiales RepID=A7B1C1_RUMGN
L3_102_363G1_scaffold_55_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15234..16247)
DNA (1014bp) protein (338aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=4 Tax=Clostridiales RepID=A7B1C0_RUMGN
L3_102_363G1_scaffold_55_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16332..19805)
DNA (3474bp) protein (1158aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TP59_9FIRM
L3_102_363G1_scaffold_55_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19922..20158)
DNA (237bp) protein (79aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B1B8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17926.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_102_363G1_scaffold_55_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20229..21050)
DNA (822bp) protein (274aa)
S1 RNA binding domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1B7_RUMGN
S1 RNA binding domain protein {ECO:0000313|EMBL:EDN78039.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_102_363G1_scaffold_55_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21097..21888)
DNA (792bp) protein (264aa)
Acyl-ACP thioesterase (EC:3.1.2.14)
Acyl-ACP thioesterase n=2 Tax=Clostridiales RepID=A7B1B6_RUMGN
Acyl-ACP thioesterase {ECO:0000313|EMBL:EDN78038.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_102_363G1_scaffold_55_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21830..23008)
DNA (1179bp) protein (393aa)
Cation diffusion facilitator family transporter n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1B5_RUMGN
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EDN78037.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
cation diffusion facilitator family transporter
L3_102_363G1_scaffold_55_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23036..23662)
DNA (627bp) protein (209aa)
Putative stage II sporulation protein R n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TP54_9FIRM
Putative stage II sporulation protein R {ECO:0000313|EMBL:CCZ67430.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
stage II sporulation protein R
L3_102_363G1_scaffold_55_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23772..24443)
DNA (672bp) protein (224aa)
FCD domain protein n=3 Tax=Lachnospiraceae RepID=A7B1B3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43645.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
transcriptional regulator, GntR family
L3_102_363G1_scaffold_55_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24445..25320)
DNA (876bp) protein (292aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1B2_RUMGN
L3_102_363G1_scaffold_55_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25401..26963)
DNA (1563bp) protein (521aa)
LysM domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1B1_RUMGN
LysM domain protein {ECO:0000313|EMBL:EDN78033.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
LysM domain.
L3_102_363G1_scaffold_55_25
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26973..27407)
DNA (435bp) protein (145aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BS70_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43648.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_102_363G1_scaffold_55_26
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27577..28311
DNA (735bp) protein (245aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC:2.3.1.51)
Acyltransferase n=3 Tax=Lachnospiraceae RepID=A7B1A9_RUMGN
L3_102_363G1_scaffold_55_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28332..29780
DNA (1449bp) protein (483aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
putative nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=4 Tax=Clostridiales RepID=A7B1A8_RUMGN
L3_102_363G1_scaffold_55_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29795..30850
DNA (1056bp) protein (352aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=4 Tax=Clostridiales RepID=A7B1A7_RUMGN
L3_102_363G1_scaffold_55_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30878..32248
DNA (1371bp) protein (457aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=3 Tax=Lachnospiraceae RepID=A7B1A6_RUMGN
L3_102_363G1_scaffold_55_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32252..33061
DNA (810bp) protein (270aa)
Cof-like hydrolase n=3 Tax=Lachnospiraceae RepID=A7B1A5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43653.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
HAD-superfamily hydrolase, subfamily IIB
Displaying items 1-30 of 100 in total

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