ggKbase home page

L3_102_363G1_scaffold_237

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_363G1_scaffold_237_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(168..548)
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PGX6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22860.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glyoxalase
L3_102_363G1_scaffold_237_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(772..1812)
DNA (1041bp) protein (347aa)
Trigger factor n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQX9_9CLOT
Trigger factor {ECO:0000256|RuleBase:RU003914}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
trigger factor
L3_102_363G1_scaffold_237_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2058..2498
DNA (441bp) protein (147aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQX8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81583.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_102_363G1_scaffold_237_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2530..3003)
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQX7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22871.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_363G1_scaffold_237_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3012..3839)
DNA (828bp) protein (276aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=2 Tax=Clostridium RepID=B6FQX6_9CLOT
L3_102_363G1_scaffold_237_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3958..4932)
DNA (975bp) protein (325aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=2 Tax=Clostridium RepID=B6FQX5_9CLOT
L3_102_363G1_scaffold_237_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5005..8475)
DNA (3471bp) protein (1157aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
DNA polymerase III, alpha subunit n=2 Tax=Clostridium RepID=B6FQX4_9CLOT
L3_102_363G1_scaffold_237_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8737..9480
DNA (744bp) protein (248aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQX3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22875.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_363G1_scaffold_237_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9510..12749
DNA (3240bp) protein (1080aa)
F5/8 type C domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQX2_9CLOT
F5/8 type C domain protein {ECO:0000313|EMBL:EEA81577.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_102_363G1_scaffold_237_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12870..13730
DNA (861bp) protein (287aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6QLN1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22877.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_363G1_scaffold_237_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13769..14005)
DNA (237bp) protein (79aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQW9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22878.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_363G1_scaffold_237_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14047..14877)
DNA (831bp) protein (277aa)
S1 RNA binding domain protein n=2 Tax=Clostridium RepID=B6FQW8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22879.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_363G1_scaffold_237_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14878..15591)
DNA (714bp) protein (238aa)
Acyl-ACP thioesterase (EC:3.1.2.14)
Acyl-ACP thioesterase n=2 Tax=Clostridium RepID=B6FQW7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22880.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_102_363G1_scaffold_237_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15592..16773)
DNA (1182bp) protein (394aa)
Cation diffusion facilitator family transporter n=2 Tax=Clostridium RepID=B6FQW6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22881.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cation diffusion facilitator family transporter
L3_102_363G1_scaffold_237_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16801..17436)
DNA (636bp) protein (212aa)
Stage II sporulation protein R n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQW5_9CLOT
Stage II sporulation protein R {ECO:0000313|EMBL:EEA81570.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
stage II sporulation protein R
L3_102_363G1_scaffold_237_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17501..18175)
DNA (675bp) protein (225aa)
FCD domain protein n=2 Tax=Clostridium RepID=B6FQW4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22883.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcriptional regulator, GntR family
L3_102_363G1_scaffold_237_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18180..19058)
DNA (879bp) protein (293aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=2 Tax=Clostridium RepID=B6FQW3_9CLOT
L3_102_363G1_scaffold_237_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19135..20694)
DNA (1560bp) protein (520aa)
LysM domain protein n=2 Tax=Clostridium RepID=B6FQW2_9CLOT
LysM domain protein {ECO:0000313|EMBL:EEA81567.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LysM domain.
L3_102_363G1_scaffold_237_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20707..21114)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PWN7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22886.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_363G1_scaffold_237_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21257..22780
DNA (1524bp) protein (508aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
4-alpha-glucanotransferase (EC:2.4.1.25)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QLP2_9CLOT
L3_102_363G1_scaffold_237_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22805..23542
DNA (738bp) protein (246aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC:2.3.1.51)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PEW7_9CLOT
L3_102_363G1_scaffold_237_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23697..25151
DNA (1455bp) protein (485aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQV8_9CLOT
L3_102_363G1_scaffold_237_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25177..26232
DNA (1056bp) protein (352aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=2 Tax=Clostridium RepID=B6FQV7_9CLOT
L3_102_363G1_scaffold_237_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26248..27627
DNA (1380bp) protein (460aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=2 Tax=Clostridium RepID=B6FQV6_9CLOT
L3_102_363G1_scaffold_237_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27655..28461
DNA (807bp) protein (269aa)
Cof-like hydrolase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQV5_9CLOT
Cof-like hydrolase {ECO:0000313|EMBL:EEA81560.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
HAD-superfamily hydrolase, subfamily IIB
L3_102_363G1_scaffold_237_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28535..30496)
DNA (1962bp) protein (654aa)
F5/8 type C domain protein n=2 Tax=Clostridium nexile DSM 1787 RepID=B6FQV3_9CLOT
F5/8 type C domain protein {ECO:0000313|EMBL:EEA81597.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_102_363G1_scaffold_237_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30705..31868)
DNA (1164bp) protein (388aa)
Alcohol dehydrogenase, iron-dependent {ECO:0000313|EMBL:EEA81596.1}; EC=1.1.1.1 {ECO:0000313|EMBL:EEA81596.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Alcohol dehydrogenase, iron-dependent n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQV1_9CLOT
NADH-dependent butanol dehydrogenase
L3_102_363G1_scaffold_237_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31890..32519)
DNA (630bp) protein (210aa)
Flavin reductase {ECO:0000313|EMBL:EEA81595.1}; EC=1.7.-.- {ECO:0000313|EMBL:EEA81595.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Flavin reductase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQV0_9CLOT
putative flavoprotein
L3_102_363G1_scaffold_237_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32607..33005
DNA (399bp) protein (133aa)
Transcriptional regulator, MerR family n=2 Tax=Clostridium RepID=B6FQU9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22898.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
putative transcriptional regulator
L3_102_363G1_scaffold_237_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33411..33593)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQU6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81591.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
Displaying items 1-30 of 40 in total

View Taxonomy