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L3_102_363G1_scaffold_252

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_363G1_scaffold_252_1
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(341..1243)
DNA (903bp) protein (301aa)
RadC-like JAB domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0WU72_9CLOT
RadC-like JAB domain protein {ECO:0000313|EMBL:EJF39921.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
DNA repair proteins
L3_102_363G1_scaffold_252_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1404..2363
DNA (960bp) protein (320aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase, RluA family n=1 Tax=Clostridium sp. MSTE9 RepID=J1H3V5_9CLOT
L3_102_363G1_scaffold_252_3
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2920..3246)
DNA (327bp) protein (109aa)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
phosphoribosyl-ATP pyrophosphohydrolase (EC:3.6.1.31)
Phosphoribosyl-ATP pyrophosphatase n=1 Tax=Clostridium sp. MSTE9 RepID=J1HA91_9CLOT
L3_102_363G1_scaffold_252_4
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3276..3638)
DNA (363bp) protein (121aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
Phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Eubacterium sp. CAG:251 RepID=R6QQH5_9FIRM
L3_102_363G1_scaffold_252_5
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3635..4360)
DNA (726bp) protein (242aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H5P2_9FIRM
L3_102_363G1_scaffold_252_6
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4382..4957)
DNA (576bp) protein (192aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Clostridium sp. CAG:352 RepID=R6QVS7_9CLOT
L3_102_363G1_scaffold_252_7
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4959..6026)
DNA (1068bp) protein (356aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase (EC:2.6.1.9)
histidyl-tRNA synthetase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000381E42F
L3_102_363G1_scaffold_252_8
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6047..7333)
DNA (1287bp) protein (429aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase n=1 Tax=Clostridium sp. CAG:964 RepID=R6UL94_9CLOT
L3_102_363G1_scaffold_252_9
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7330..7971)
DNA (642bp) protein (214aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00008790}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase n=2 Tax=Clostridium RepID=A7VWK4_9CLOT
L3_102_363G1_scaffold_252_10
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7985..9178)
DNA (1194bp) protein (398aa)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWK3_9CLOT
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
ATP phosphoribosyltransferase, regulatory subunit
L3_102_363G1_scaffold_252_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9289..13629)
DNA (4341bp) protein (1447aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
DNA polymerase III catalytic subunit, PolC type (EC:2.7.7.7)
DNA polymerase III polC-type n=1 Tax=Clostridium sp. MSTE9 RepID=J0X0Z5_9CLOT
L3_102_363G1_scaffold_252_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13645..14694)
DNA (1050bp) protein (350aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035FDF16
L3_102_363G1_scaffold_252_13
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15279..16346)
DNA (1068bp) protein (356aa)
Peptidase, M50 family {ECO:0000313|EMBL:EJF42483.1}; EC=3.4.24.- {ECO:0000313|EMBL:EJF42483.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Peptidase, M50 family n=1 Tax=Clostridium sp. MSTE9 RepID=J1HAT8_9CLOT
RIP metalloprotease RseP
L3_102_363G1_scaffold_252_14
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16359..17507)
DNA (1149bp) protein (383aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridium sp. MSTE9 RepID=J0X1L7_9CLOT
L3_102_363G1_scaffold_252_15
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17545..18369)
DNA (825bp) protein (275aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
CDP-diglyceride synthetase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=1 Tax=Clostridium sp. MSTE9 RepID=J0N6P4_9CLOT
L3_102_363G1_scaffold_252_16
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18371..19096)
DNA (726bp) protein (242aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase n=2 Tax=Clostridium RepID=A7VWJ6_9CLOT
L3_102_363G1_scaffold_252_17
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19118..19672)
DNA (555bp) protein (185aa)
ribosome recycling factor n=1 Tax=Clostridium sporosphaeroides RepID=UPI000361C241
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ribosome recycling factor
L3_102_363G1_scaffold_252_18
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19731..20444)
DNA (714bp) protein (238aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Clostridium sp. MSTE9 RepID=J0X1M8_9CLOT
L3_102_363G1_scaffold_252_19
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20555..21565)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PCD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS10890.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_102_363G1_scaffold_252_20
unknown

Not on your lists

comp(21614..21724)
DNA (111bp) protein (37aa)

This feature has no annotations

L3_102_363G1_scaffold_252_21
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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comp(21724..22266)
DNA (543bp) protein (181aa)
Carbonate dehydratase n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HCL9_9FIRM
Carbonate dehydratase {ECO:0000313|EMBL:CCY25874.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
carbonic anhydrase
L3_102_363G1_scaffold_252_22
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22558..23661)
DNA (1104bp) protein (368aa)
ypsC; putative RNA methyltransferase YpsC (EC:2.1.1.-)
RNA methyltransferase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037C925A
RNA methylase, PF01170 family {ECO:0000313|EMBL:EJF38512.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_102_363G1_scaffold_252_23
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23752..24297)
DNA (546bp) protein (182aa)
ribosomal subunit interface protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037FD0FB
Ribosomal subunit interface protein {ECO:0000313|EMBL:EJF38525.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ribosomal subunit interface protein
L3_102_363G1_scaffold_252_24
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24423..25265)
DNA (843bp) protein (281aa)
fumarase alpha subunit (EC:4.2.1.2)
Fumarate hydratase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A809_9CLOT
Fumarate hydratase {ECO:0000313|EMBL:CCX37232.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_102_363G1_scaffold_252_25
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25279..26433)
DNA (1155bp) protein (385aa)
amidohydrolase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00038267D3
Amidohydrolase {ECO:0000313|EMBL:EJF38564.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
amidohydrolase
L3_102_363G1_scaffold_252_26
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26499..26951)
DNA (453bp) protein (151aa)
S1 RNA binding domain protein n=2 Tax=Clostridium RepID=A7VXE3_9CLOT
S1 RNA binding domain protein {ECO:0000313|EMBL:EDO60440.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
RNA binding S1 domain-containing protein
L3_102_363G1_scaffold_252_27
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26980..27327)
DNA (348bp) protein (116aa)
Septum formation initiator n=2 Tax=Clostridium RepID=J0N2F5_9CLOT
Septum formation initiator {ECO:0000313|EMBL:EJF38552.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Septum formation initiator.
L3_102_363G1_scaffold_252_28
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27311..27868)
DNA (558bp) protein (186aa)
Putative spore cortex biosynthesis protein YabQ n=1 Tax=Clostridium sp. MSTE9 RepID=J0N2G9_9CLOT
Putative spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:EJF38572.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Spore cortex biosynthesis protein, YabQ-like protein
L3_102_363G1_scaffold_252_29
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27881..28168)
DNA (288bp) protein (96aa)
Sporulation protein YabP n=1 Tax=Clostridium sp. MSTE9 RepID=J0N2D5_9CLOT
Sporulation protein YabP {ECO:0000313|EMBL:EJF38527.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
sporulation protein YabP
L3_102_363G1_scaffold_252_30
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28278..28526)
DNA (249bp) protein (83aa)
S4 domain protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A813_9CLOT
S4 domain protein {ECO:0000313|EMBL:CCX37237.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
Displaying items 1-30 of 41 in total

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