ggKbase home page

L3_102_363G1_scaffold_253

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_363G1_scaffold_253_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..614)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C818_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD23175.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Site-specific recombinase XerD
L3_102_363G1_scaffold_253_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(636..818)
DNA (183bp) protein (61aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R6PEK7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ETD23174.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_102_363G1_scaffold_253_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1052..1576
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PPN9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22769.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Helix-turn-helix.
L3_102_363G1_scaffold_253_4
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2201..4135)
DNA (1935bp) protein (645aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDJ6_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEG30482.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ABC-type multidrug transport system, ATPase and permease components
L3_102_363G1_scaffold_253_5
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4128..5879)
DNA (1752bp) protein (584aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDJ5_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEG30481.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ABC transporter ATP-binding protein/permease
L3_102_363G1_scaffold_253_6
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5948..6367)
DNA (420bp) protein (140aa)
Transcriptional regulator, MarR family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDJ4_9CLOT
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EEG30480.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
MarR family transcriptional regulator
L3_102_363G1_scaffold_253_7
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6502..6882)
DNA (381bp) protein (127aa)
TnpV protein n=1 Tax=human gut metagenome RepID=K1SE55_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CDC02251.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
hypothetical protein
L3_102_363G1_scaffold_253_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6906..8045)
DNA (1140bp) protein (380aa)
Plasmid recombination enzyme n=2 Tax=root RepID=R5DR37_9FIRM
Plasmid recombination enzyme {ECO:0000313|EMBL:CCX82633.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
mob; Mob
L3_102_363G1_scaffold_253_9
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8336..9490)
DNA (1155bp) protein (385aa)
Uncharacterized protein n=5 Tax=Bacteria RepID=I3WHJ8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPD55992.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
L3_102_363G1_scaffold_253_10
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

Not on your lists

comp(9480..9815)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:308 RepID=R7AF04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD51966.1}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
hypothetical protein
L3_102_363G1_scaffold_253_11
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9805..10896)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5PAR1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EPD55990.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
Site-specific recombinase XerD
L3_102_363G1_scaffold_253_12
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10897..11085)
DNA (189bp) protein (63aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5E182_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB01243.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
hypothetical protein
L3_102_363G1_scaffold_253_13
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11389..11922
DNA (534bp) protein (178aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5DXH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84960.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
Helix-turn-helix.
L3_102_363G1_scaffold_253_14
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

Not on your lists

11935..12264
DNA (330bp) protein (110aa)
Regulator of competence-specific genes n=1 Tax=Firmicutes bacterium CAG:308 RepID=R7AXV5_9FIRM
Regulator of competence-specific genes {ECO:0000313|EMBL:CDD51962.1}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
Regulator of competence-specific genes
L3_102_363G1_scaffold_253_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12482..14026)
DNA (1545bp) protein (515aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008788}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
GMP synthase [glutamine-hydrolyzing] n=2 Tax=Clostridium RepID=B6FL37_9CLOT
GMP synthase
L3_102_363G1_scaffold_253_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14142..16472)
DNA (2331bp) protein (777aa)
Ferrous iron transport protein B n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FL36_9CLOT
Ferrous iron transport protein B {ECO:0000313|EMBL:EEA83224.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ferrous iron transporter FeoB
L3_102_363G1_scaffold_253_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16761..17366)
DNA (606bp) protein (202aa)
RelA/SpoT domain protein n=2 Tax=Clostridium RepID=B6FL35_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22785.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_363G1_scaffold_253_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17388..17774)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PWC6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22786.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_363G1_scaffold_253_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17749..18651)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FL33_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83221.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
exopolysaccharide biosynthesis protein
L3_102_363G1_scaffold_253_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18653..19702)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PEM4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22788.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Glycosyltransferase Family 2 protein
L3_102_363G1_scaffold_253_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19733..21424)
DNA (1692bp) protein (564aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PPQ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22789.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_363G1_scaffold_253_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21436..22131)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGQ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22790.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_102_363G1_scaffold_253_23
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(22124..22843)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RHU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC42566.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
VTC domain-containing protein
L3_102_363G1_scaffold_253_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22986..24221)
DNA (1236bp) protein (412aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridium RepID=B6FL26_9CLOT
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L3_102_363G1_scaffold_253_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24218..24892)
DNA (675bp) protein (225aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FL25_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:EEA83280.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_102_363G1_scaffold_253_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24989..26287)
DNA (1299bp) protein (433aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Phosphomethylpyrimidine synthase n=2 Tax=Clostridium RepID=B6FL24_9CLOT
thiC; thiamine biosynthesis protein ThiC
L3_102_363G1_scaffold_253_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26289..27095)
DNA (807bp) protein (269aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=2 Tax=Clostridium RepID=B6FL23_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22796.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_102_363G1_scaffold_253_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27108..27743)
DNA (636bp) protein (212aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FL22_9CLOT
L3_102_363G1_scaffold_253_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27733..28584)
DNA (852bp) protein (284aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FL21_9CLOT
L3_102_363G1_scaffold_253_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28598..29107)
DNA (510bp) protein (170aa)
Protein ThiW n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FL20_9CLOT
Protein ThiW {ECO:0000313|EMBL:EEA83275.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
thiW protein
Displaying items 1-30 of 41 in total

View Taxonomy