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L3_102_363G1_scaffold_268

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_363G1_scaffold_268_1
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..839
DNA (837bp) protein (279aa)
RmuC domain protein n=2 Tax=Bifidobacterium dentium RepID=E0QAJ9_9BIFI
RmuC domain protein {ECO:0000313|EMBL:ETO96524.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
DNA recombination protein rmuC-like protein
L3_102_363G1_scaffold_268_2
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

865..1527
DNA (663bp) protein (221aa)
pyrE; orotate phosphoribosyltransferase PyrE (EC:2.4.2.10)
Orotate phosphoribosyltransferase family protein n=2 Tax=Bifidobacterium dentium RepID=E0QAK0_9BIFI
Orotate phosphoribosyltransferase family protein {ECO:0000313|EMBL:EFM40348.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L3_102_363G1_scaffold_268_3
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1616..2578
DNA (963bp) protein (321aa)
tRNA/rRNA methyltransferase (EC:2.1.1.34)
RNA methyltransferase, TrmH family n=2 Tax=Bifidobacterium dentium RepID=E0QAK1_9BIFI
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:ETO96527.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_102_363G1_scaffold_268_4
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2620..3495)
DNA (876bp) protein (292aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0QAK2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM40350.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L3_102_363G1_scaffold_268_5
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4152..4448
DNA (297bp) protein (99aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=3 Tax=Bifidobacterium dentium RepID=B1SAA8_9BIFI
glutamyl-tRNA amidotransferase
L3_102_363G1_scaffold_268_6
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4450..5985
DNA (1536bp) protein (512aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
gatA; aspartyl/glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=2 Tax=Bifidobacterium dentium RepID=E0QAK4_9BIFI
L3_102_363G1_scaffold_268_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6026..7507
DNA (1482bp) protein (494aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
gatB; aspartyl/glutamyl-tRNA(Gln) amidotransferase subunit B (EC:6.1.1.18)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=2 Tax=Bifidobacterium dentium RepID=E0QAK5_9BIFI
L3_102_363G1_scaffold_268_8
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7751..8824
DNA (1074bp) protein (358aa)
acetyltransferase (EC:2.3.1.57)
Acetyltransferase, GNAT family n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0QAK6_9BIFI
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFM40354.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L3_102_363G1_scaffold_268_9
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8824..9138
DNA (315bp) protein (105aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=E1NAF4_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETY72359.1}; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium moukalabense DSM 27321.;"
L3_102_363G1_scaffold_268_10
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9321..10394
DNA (1074bp) protein (358aa)
Histidine acid phosphatase n=2 Tax=Bifidobacterium dentium RepID=E0QAK8_9BIFI
Histidine phosphatase superfamily (Branch 2) {ECO:0000313|EMBL:ETO96507.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_102_363G1_scaffold_268_11
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10425..11165
DNA (741bp) protein (247aa)
Histidine acid phosphatase n=2 Tax=Bifidobacterium dentium RepID=E0QAK8_9BIFI
Histidine acid phosphatase {ECO:0000313|EMBL:EFM40356.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L3_102_363G1_scaffold_268_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11369..12958
DNA (1590bp) protein (530aa)
Flavin containing amine oxidoreductase n=4 Tax=Bifidobacterium dentium RepID=D2Q6L6_BIFDB
flavin containing amine oxidoreductase
NAD(P)-binding Rossmann-like domain protein {ECO:0000313|EMBL:ETO96500.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_102_363G1_scaffold_268_13
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13219..15240
DNA (2022bp) protein (674aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Transcription termination factor Rho n=3 Tax=Bifidobacterium dentium RepID=E0QAL0_9BIFI
rho; transcription termination factor Rho
L3_102_363G1_scaffold_268_14
unknown

Not on your lists

15450..15548
DNA (99bp) protein (33aa)

This feature has no annotations

L3_102_363G1_scaffold_268_15
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15673..16149
DNA (477bp) protein (159aa)
Transcriptional regulator, AsnC family n=2 Tax=Bifidobacterium dentium RepID=D2Q6L4_BIFDB
AsnC family transcriptional regulator
Winged helix-turn-helix DNA-binding protein {ECO:0000313|EMBL:ETO96525.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_102_363G1_scaffold_268_16
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16166..16579
DNA (414bp) protein (138aa)
tyrA; chorismate mutase TyrA (EC:5.4.99.5)
Chorismate mutase {ECO:0000313|EMBL:EFM40360.1}; EC=5.4.99.5 {ECO:0000313|EMBL:EFM40360.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Chorismate mutase TyrA n=4 Tax=Bifidobacterium dentium RepID=D2Q6L3_BIFDB
L3_102_363G1_scaffold_268_17
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16681..18744
DNA (2064bp) protein (688aa)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=E0QAL3_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM40361.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L3_102_363G1_scaffold_268_18
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(18802..21591)
DNA (2790bp) protein (930aa)
Valine--tRNA ligase {ECO:0000256|SAAS:SAAS00105779}; EC=6.1.1.9 {ECO:0000256|SAAS:SAAS00105779};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
valS; valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0QAL4_9BIFI
L3_102_363G1_scaffold_268_19
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21673..23217)
DNA (1545bp) protein (515aa)
ABC transporter, substrate-binding protein, family 5 n=2 Tax=Bifidobacterium dentium RepID=E0QAL5_9BIFI
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EFM40363.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
peptides ABC transporter substrate-binding protein
L3_102_363G1_scaffold_268_20
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23270..23899)
DNA (630bp) protein (210aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III n=2 Tax=Bifidobacterium dentium RepID=E1NAE4_9BIFI
L3_102_363G1_scaffold_268_21
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23984..24787)
DNA (804bp) protein (268aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0QAL7_9BIFI
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EFM40365.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
response regulator-like transcriptional regulatory protein
L3_102_363G1_scaffold_268_22
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24896..25657
DNA (762bp) protein (254aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0QAL8_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM40366.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L3_102_363G1_scaffold_268_23
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25869..26399)
DNA (531bp) protein (177aa)
Putative manganese efflux pump MntP n=2 Tax=Bifidobacterium dentium RepID=E0QAL9_9BIFI
hypothetical protein
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L3_102_363G1_scaffold_268_24
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27170..27664)
DNA (495bp) protein (165aa)
inorganic pyrophosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
Inorganic pyrophosphatase n=4 Tax=Bifidobacterium dentium RepID=D2Q6K3_BIFDB
L3_102_363G1_scaffold_268_25
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27881..30076)
DNA (2196bp) protein (732aa)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; Short=GMPMT {ECO:0000256|HAMAP-Rule:MF_02124};; EC=2.4.99.16 {ECO:0000256|HAMAP-Rule:MF_02124};; (1->4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
alpha-amylase family protein (EC:3.2.1.10)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase n=2 Tax=Bifidobacterium dentium RepID=D2Q6K2_BIFDB
L3_102_363G1_scaffold_268_26
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30347..32179
DNA (1833bp) protein (611aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q6H7_BIFDB
Putative lipoprotein {ECO:0000313|EMBL:ETO96892.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_102_363G1_scaffold_268_27
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32374..34143
DNA (1770bp) protein (590aa)
oxc; oxalyl-CoA decarboxylase (EC:4.1.2.38)
Oxalyl-CoA decarboxylase n=2 Tax=Bifidobacterium dentium RepID=D2Q6H6_BIFDB
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27847.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L3_102_363G1_scaffold_268_28
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34228..35304
DNA (1077bp) protein (359aa)
Transporter, auxin efflux carrier (AEC) family protein n=2 Tax=Bifidobacterium dentium RepID=E0QAM9_9BIFI
Transporter, auxin efflux carrier (AEC) family protein {ECO:0000313|EMBL:EFM40377.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
auxin efflux carrier-like permease
L3_102_363G1_scaffold_268_29
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35556..36866)
DNA (1311bp) protein (437aa)
Formyl-CoA:oxalate CoA-transferase {ECO:0000256|HAMAP-Rule:MF_00742}; Short=FCOCT {ECO:0000256|HAMAP-Rule:MF_00742};; EC=2.8.3.16 {ECO:0000256|HAMAP-Rule:MF_00742};; Formyl-coenzyme A transferase {ECO:0000256|HAMAP-Rule:MF_00742}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
frc; formyl-coenzyme A transferase (EC:2.8.3.16)
Formyl-CoA transferase n=2 Tax=Bifidobacterium dentium RepID=E0QAN0_9BIFI
L3_102_363G1_scaffold_268_30
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37522..38556
DNA (1035bp) protein (345aa)
metA; homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
Homoserine O-succinyltransferase n=4 Tax=Bifidobacterium dentium RepID=D2Q6H3_BIFDB
Displaying items 1-30 of 32 in total

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