ggKbase home page

L3_102_363G1_scaffold_449

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_102_363G1_scaffold_449_1
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..619
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IX37_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41347.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
mannitol-1-phosphate/altronate dehydrogenase
L3_102_363G1_scaffold_449_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

939..1448
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IGY4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41345.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Protein of unknown function (DUF1653).
L3_102_363G1_scaffold_449_3
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1485..3416
DNA (1932bp) protein (644aa)
UvrABC system protein C n=1 Tax=Clostridium bolteae 90B8 RepID=N9Z561_9CLOT
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
excinuclease ABC subunit C
L3_102_363G1_scaffold_449_4
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3489..4421
DNA (933bp) protein (311aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
HPr kinase/phosphorylase n=1 Tax=Clostridium clostridioforme CAG:511 RepID=R7PKT9_9CLOT
HPr kinase
L3_102_363G1_scaffold_449_5
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4446..5357
DNA (912bp) protein (304aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Clostridium bolteae 90B8 RepID=R0AEM6_9CLOT
L3_102_363G1_scaffold_449_6
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5372..6241
DNA (870bp) protein (290aa)
UPF0042 nucleotide-binding protein BN757_01633 n=1 Tax=Clostridium sp. CAG:7 RepID=R5IGR8_9CLOT
Nucleotide-binding protein BN757_01633 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_102_363G1_scaffold_449_7
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6251..7210
DNA (960bp) protein (320aa)
Putative sporulation transcription regulator WhiA n=1 Tax=Clostridium sp. CAG:7 RepID=R5IX90_9CLOT
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_102_363G1_scaffold_449_8
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7247..7501
DNA (255bp) protein (85aa)
Phosphotransferase system n=1 Tax=Clostridium sp. CAG:7 RepID=R5IX20_9CLOT
Phosphotransferase system {ECO:0000313|EMBL:CCY41332.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Phosphotransferase System HPr (HPr) Family
L3_102_363G1_scaffold_449_9
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7637..11122
DNA (3486bp) protein (1162aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
DNA polymerase III subunit alpha (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IX84_9CLOT
L3_102_363G1_scaffold_449_10
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11201..12175
DNA (975bp) protein (325aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
6-phosphofructokinase n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HCL0_9CLOT
6-phosphofructokinase
L3_102_363G1_scaffold_449_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12246..12608
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IGQ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41328.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_102_363G1_scaffold_449_12
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12598..13566
DNA (969bp) protein (323aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
tRNA-dihydrouridine synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IX15_9CLOT
nifR3 family TIM-barrel protein
L3_102_363G1_scaffold_449_13
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13902..14384
DNA (483bp) protein (161aa)
Transcription elongation factor GreA n=1 Tax=Clostridium sp. CAG:7 RepID=R5J3U1_9CLOT
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
GreA/GreB family elongation factor
L3_102_363G1_scaffold_449_14
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14429..15922
DNA (1494bp) protein (498aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EJ67_9FIRM
L3_102_363G1_scaffold_449_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16127..16297)
DNA (171bp) protein (57aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K0C8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN44903.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_102_363G1_scaffold_449_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16426..16872
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K0C7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN44902.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_102_363G1_scaffold_449_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16872..17489
DNA (618bp) protein (206aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K0C6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN44901.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_102_363G1_scaffold_449_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17570..18115
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K0C5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN44900.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_102_363G1_scaffold_449_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18310..18996)
DNA (687bp) protein (229aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K0C4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN44899.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted transcriptional regulators
L3_102_363G1_scaffold_449_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19247..19576
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K0C3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN44898.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_102_363G1_scaffold_449_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19820..20746
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K0C2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN44897.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Putative phage replication protein RstA
L3_102_363G1_scaffold_449_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20841..21038
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K0C1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN44896.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
DNA binding domain, excisionase family
L3_102_363G1_scaffold_449_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21115..22353
DNA (1239bp) protein (413aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K0C0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN44895.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
integrase family protein
L3_102_363G1_scaffold_449_24
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


22473..22979
DNA (507bp) protein (169aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
Lysine--tRNA ligase n=1 Tax=Clostridium clostridioforme CM201 RepID=N9VLB4_9CLOT
L3_102_363G1_scaffold_449_25
unknown

Not on your lists

23346..23585
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Clostridium sporogenes PA 3679 RepID=G9EVB5_CLOSG
L3_102_363G1_scaffold_449_26
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23569..24423
DNA (855bp) protein (285aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5MDE9_9CLOT
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:CCY83107.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
soj; sporulation initiation inhibitor protein Soj
L3_102_363G1_scaffold_449_27
unknown

Not on your lists

24686..24922
DNA (237bp) protein (79aa)

This feature has no annotations

L3_102_363G1_scaffold_449_28
unknown

Not on your lists

24978..25214
DNA (237bp) protein (79aa)

This feature has no annotations

L3_102_363G1_scaffold_449_29
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25255..25515
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9YX59_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ16608.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
L3_102_363G1_scaffold_449_30
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25638..26855)
DNA (1218bp) protein (406aa)
Transposase family protein n=3 Tax=Coprococcus RepID=R6LAL3_9FIRM
Transposase family protein {ECO:0000313|EMBL:CDB84503.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
Transposase IS116/IS110/IS902 family./Transposase.
Displaying 30 items

View Taxonomy