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L3_105_000G1_scaffold_18

Search features with annotation key words

Displaying items 1-30 of 216 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000G1_scaffold_18_1
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..150
DNA (150bp) protein (50aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31080.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
flagellin domain-containing protein
L3_105_000G1_scaffold_18_2
Paenibacillus sp. P1XP2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

227..1474
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJJ7_9FIRM
Flagellar biosynthetic protein FliU {ECO:0000313|EMBL:KHF35040.1}; TaxID=1472719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. P1XP2.;"
hypothetical protein
L3_105_000G1_scaffold_18_3
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1599..1913)
DNA (315bp) protein (105aa)
FlhB domain-containing protein n=1 Tax=Dorea sp. 5-2 RepID=R9MRX1_9FIRM
FlhB domain-containing protein {ECO:0000313|EMBL:EOS73830.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
type III secretion exporter
L3_105_000G1_scaffold_18_4
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1900..3315)
DNA (1416bp) protein (472aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31083.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
hypothetical protein
L3_105_000G1_scaffold_18_5
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3410..5482
DNA (2073bp) protein (691aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK50_9FIRM
chemotaxis protein CheA
L3_105_000G1_scaffold_18_6
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5500..5976
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N196_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS73827.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
chemotaxis protein CheW
L3_105_000G1_scaffold_18_7
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5998..6810
DNA (813bp) protein (271aa)
chemotaxis protein CheR (EC:2.1.1.80)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31086.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
L3_105_000G1_scaffold_18_8
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6828..7862
DNA (1035bp) protein (345aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
response regulator receiver modulated CheB methylesterase (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Clostridium sp. ASF502 RepID=N2A6W6_9CLOT
L3_105_000G1_scaffold_18_9
unknown

Not on your lists

7986..8297
DNA (312bp) protein (104aa)

This feature has no annotations

L3_105_000G1_scaffold_18_10
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8298..8759
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9MSU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS73823.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
FlgN family protein
L3_105_000G1_scaffold_18_11
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8781..10316
DNA (1536bp) protein (512aa)
Flagellar hook-associated protein FlgK n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK56_9FIRM
Flagellar hook-associated protein FlgK {ECO:0000313|EMBL:EGN31090.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
flagellar hook-associated protein FlgK
L3_105_000G1_scaffold_18_12
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10328..11341
DNA (1014bp) protein (338aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK57_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31091.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Flagellin and related hook-associated protein-like protein
L3_105_000G1_scaffold_18_13
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11365..11970
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9MRW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS73820.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L3_105_000G1_scaffold_18_14
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12003..12446
DNA (444bp) protein (148aa)
Flagellar assembly factor FliW n=1 Tax=Clostridium sp. ASF502 RepID=N2ACN6_9CLOT
Flagellar assembly factor FliW {ECO:0000256|HAMAP-Rule:MF_01185}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
fliW; flagellar assembly factor FliW
L3_105_000G1_scaffold_18_15
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12449..12670
DNA (222bp) protein (74aa)
Carbon storage regulator n=1 Tax=Clostridium sp. ASF502 RepID=N2A7X2_9CLOT
Carbon storage regulator {ECO:0000313|EMBL:EMZ22190.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
carbon storage regulator CsrA
L3_105_000G1_scaffold_18_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12710..13237)
DNA (528bp) protein (176aa)
50S ribosomal protein L17 n=2 Tax=Clostridium RepID=B6FLG3_9CLOT
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
LSU ribosomal protein L17P
L3_105_000G1_scaffold_18_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13355..14314)
DNA (960bp) protein (320aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DNA-directed RNA polymerase subunit alpha n=2 Tax=Clostridium RepID=B6FLG2_9CLOT
DNA-directed RNA polymerase subunit alpha
L3_105_000G1_scaffold_18_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14382..14975)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=2 Tax=Clostridium RepID=B6FLG1_9CLOT
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
SSU ribosomal protein S4P
L3_105_000G1_scaffold_18_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14992..15387)
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=10 Tax=Clostridiales RepID=B0NFF4_CLOSV
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
SSU ribosomal protein S11P
L3_105_000G1_scaffold_18_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15552..15920)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=2 Tax=Clostridium RepID=B6FLF9_9CLOT
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
30S ribosomal protein S13
L3_105_000G1_scaffold_18_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16454..16672)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLF7_9CLOT
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
translation initiation factor IF-1
L3_105_000G1_scaffold_18_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16675..16929)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PXV6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23301.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_105_000G1_scaffold_18_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16943..17698)
DNA (756bp) protein (252aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase n=2 Tax=Clostridium RepID=B6FLF5_9CLOT
L3_105_000G1_scaffold_18_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17704..18348)
DNA (645bp) protein (215aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=2 Tax=Clostridium RepID=B6FLF4_9CLOT
L3_105_000G1_scaffold_18_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18464..19819)
DNA (1356bp) protein (452aa)
Protein translocase subunit SecY n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLF3_9CLOT
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
protein translocase subunit secY/sec61 alpha
L3_105_000G1_scaffold_18_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19819..20259)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Clostridium nexile CAG:348 RepID=R6QMV7_9CLOT
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
LSU ribosomal protein L15P
L3_105_000G1_scaffold_18_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20283..20462)
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=2 Tax=Clostridium RepID=B6FLF1_9CLOT
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
LSU ribosomal protein L30P
L3_105_000G1_scaffold_18_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20477..20986)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=2 Tax=Clostridium RepID=B6FLF0_9CLOT
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
SSU ribosomal protein S5P
L3_105_000G1_scaffold_18_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21001..21369)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 n=2 Tax=Clostridium RepID=B6FLE9_9CLOT
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
50S ribosomal protein L18
L3_105_000G1_scaffold_18_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21387..21929)
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLE8_9CLOT
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LSU ribosomal protein L6P
Displaying items 1-30 of 216 in total

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