ggKbase home page

L3_105_000G1_scaffold_28

Search features with annotation key words

Displaying items 1-30 of 192 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000G1_scaffold_28_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..148
DNA (147bp) protein (49aa)
Acetyltransferase, GNAT family n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UUZ5_CLOBO
acetyltransferase family protein
Uncharacterized protein {ECO:0000313|EMBL:ENZ32586.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
L3_105_000G1_scaffold_28_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(241..858)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AKC9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ32587.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
L3_105_000G1_scaffold_28_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(957..1664)
DNA (708bp) protein (236aa)
Iron-sulfur flavoprotein n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IAX9_CLOBU
Iron-sulfur protein {ECO:0000313|EMBL:KHD15298.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
NADPH-dependent FMN reductase
L3_105_000G1_scaffold_28_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1937..2455
DNA (519bp) protein (173aa)
UPI0003D5D3A7 related cluster n=1 Tax=unknown RepID=UPI0003D5D3A7
NUDIX hydrolase {ECO:0000313|EMBL:KHD15297.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
NUDIX hydrolase
L3_105_000G1_scaffold_28_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2484..2630
DNA (147bp) protein (49aa)
UPI0003D63DF7 related cluster n=1 Tax=unknown RepID=UPI0003D63DF7
Uncharacterized protein {ECO:0000313|EMBL:ETI88805.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
AAA domain protein
L3_105_000G1_scaffold_28_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2646..2906
DNA (261bp) protein (87aa)
UPI0003D63DF7 related cluster n=1 Tax=unknown RepID=UPI0003D63DF7
Uncharacterized protein {ECO:0000313|EMBL:ETI88805.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
AAA domain protein
L3_105_000G1_scaffold_28_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2998..3567
DNA (570bp) protein (190aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IAX6_CLOBU
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEP56321.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
aminoglycoside phosphotransferase
L3_105_000G1_scaffold_28_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3823..4350)
DNA (528bp) protein (176aa)
Riboflavin biosynthesis protein RibD C-domain protein n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IAX5_CLOBU
Riboflavin biosynthesis protein RibD C-domain protein {ECO:0000313|EMBL:EEP56120.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
dihydrofolate reductase family protein
L3_105_000G1_scaffold_28_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4652..6208
DNA (1557bp) protein (519aa)
diguanylate cyclase (EC:2.7.7.65)
Diguanylate cyclase n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IAX4_CLOBU
Diguanylate cyclase {ECO:0000313|EMBL:EEP56477.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
L3_105_000G1_scaffold_28_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6213..6917
DNA (705bp) protein (235aa)
DNA-binding response regulator n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IAX3_CLOBU
DNA-binding response regulator {ECO:0000313|EMBL:EEP56548.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
two component transcriptional regulator, winged helix family
L3_105_000G1_scaffold_28_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6967..8502
DNA (1536bp) protein (512aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
Putative two-component sensor histidine kinase n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IAX2_CLOBU
integral membrane sensor signal transduction histidine kinase
L3_105_000G1_scaffold_28_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9020..10837
DNA (1818bp) protein (606aa)
Putative sensor histidine kinase n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IAX1_CLOBU
Putative sensor histidine kinase {ECO:0000313|EMBL:EEP56129.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
sensor histidine kinase
L3_105_000G1_scaffold_28_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10899..11630
DNA (732bp) protein (244aa)
Two-component response regulator n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IAX0_CLOBU
Two-component response regulator {ECO:0000313|EMBL:EEP56095.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
LytTr DNA-binding protein
L3_105_000G1_scaffold_28_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11831..13555
DNA (1725bp) protein (575aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IAW9_CLOBU
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EEP56021.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
methyl-accepting chemotaxis sensory transducer
L3_105_000G1_scaffold_28_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13752..14324
DNA (573bp) protein (191aa)
UPI0003D63E8C related cluster n=1 Tax=unknown RepID=UPI0003D63E8C
Uncharacterized protein {ECO:0000313|EMBL:KHD15296.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L3_105_000G1_scaffold_28_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14575..15552
DNA (978bp) protein (326aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
UPI0003D66086 related cluster n=1 Tax=unknown RepID=UPI0003D66086
dihydrouridine synthase family protein
L3_105_000G1_scaffold_28_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15703..16353
DNA (651bp) protein (217aa)
UPI0003D59BA0 related cluster n=1 Tax=unknown RepID=UPI0003D59BA0
Membrane protein {ECO:0000313|EMBL:KHD15294.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
L3_105_000G1_scaffold_28_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16477..16917)
DNA (441bp) protein (147aa)
UPI0003D5FACB related cluster n=2 Tax=unknown RepID=UPI0003D5FACB
Uncharacterized protein {ECO:0000313|EMBL:KHD15293.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L3_105_000G1_scaffold_28_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17254..17850
DNA (597bp) protein (199aa)
Glycerol-3-phosphate responsive antiterminator n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J3X5_CLOBU
Transcriptional regulator {ECO:0000313|EMBL:KHD15292.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
glpP; glycerol uptake operon antiterminator regulatory protein GlpP
L3_105_000G1_scaffold_28_20
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17999..18796
DNA (798bp) protein (266aa)
Uncharacterized protein n=3 Tax=Clostridium butyricum RepID=M8JE74_CLOBU
Hydrolase {ECO:0000313|EMBL:KHD15291.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L3_105_000G1_scaffold_28_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18901..20196
DNA (1296bp) protein (432aa)
Extracellular solute-binding protein, family 1 n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB55_CLOBU
Glycerol-3-phosphate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KHD15290.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
family 1 extracellular solute-binding protein
L3_105_000G1_scaffold_28_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20299..21204
DNA (906bp) protein (302aa)
UPI0003D64867 related cluster n=1 Tax=unknown RepID=UPI0003D64867
ABC transporter permease {ECO:0000313|EMBL:KHD15289.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
ABC transporter
L3_105_000G1_scaffold_28_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21194..22021
DNA (828bp) protein (276aa)
ABC transporter, permease protein n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB53_CLOBU
ABC transporter permease {ECO:0000313|EMBL:KHD15288.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
ABC transporter
L3_105_000G1_scaffold_28_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22031..23143
DNA (1113bp) protein (371aa)
glycerol-3-phosphate-transporting ATPase (EC:3.6.3.20)
UPI0003D63DB2 related cluster n=1 Tax=unknown RepID=UPI0003D63DB2
Lactose transport ATP-binding protein LacK {ECO:0000313|EMBL:ETI88794.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
L3_105_000G1_scaffold_28_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23170..23970
DNA (801bp) protein (267aa)
UPI0003D5FB99 related cluster n=1 Tax=unknown RepID=UPI0003D5FB99
Sugar phosphate isomerase {ECO:0000313|EMBL:KHD15286.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
sugar phosphate isomerase/epimerase
L3_105_000G1_scaffold_28_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24147..25871
DNA (1725bp) protein (575aa)
UPI0003D62B0F related cluster n=1 Tax=unknown RepID=UPI0003D62B0F
ABC transporter, ATP-binding/permease protein {ECO:0000313|EMBL:ETI88792.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
ABC transporter, ATP-binding/permease protein
L3_105_000G1_scaffold_28_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25852..27606
DNA (1755bp) protein (585aa)
UPI0003D5BE1A related cluster n=1 Tax=unknown RepID=UPI0003D5BE1A
ABC transporter, ATP-binding/permease protein {ECO:0000313|EMBL:ETI88791.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
putative ABC transporter ATP-binding protein TM_0288
L3_105_000G1_scaffold_28_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27717..28994
DNA (1278bp) protein (426aa)
Guanine deaminase (Guanase) (Guanine aminase) (Guanineaminohydrolase) (GAH) {ECO:0000313|EMBL:EEP56569.1}; EC=3.5.4.3 {ECO:0000313|EMBL:EEP56569.1};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
Guanine deaminase (EC:3.5.4.3)
Guanine deaminase (Guanase) (Guanine aminase) (Guanineaminohydrolase) (GAH) n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB48_CLOBU
L3_105_000G1_scaffold_28_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29175..30359
DNA (1185bp) protein (395aa)
Diaminopropionate ammonia-lyase n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YYQ4_CLOBU
Diaminopropionate ammonia-lyase {ECO:0000313|EMBL:KHD15282.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
diaminopropionate ammonia-lyase
L3_105_000G1_scaffold_28_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30598..31785
DNA (1188bp) protein (396aa)
UPI0003D66450 related cluster n=1 Tax=unknown RepID=UPI0003D66450
Peptidase M20 {ECO:0000313|EMBL:ETI88788.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
Displaying items 1-30 of 192 in total

View Taxonomy