ggKbase home page

L3_105_000G1_scaffold_171

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000G1_scaffold_171_1
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3..2189
DNA (2187bp) protein (729aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5V8Q7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86963.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
glycoside hydrolase
L3_105_000G1_scaffold_171_2
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2202..4613
DNA (2412bp) protein (804aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VGE2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86964.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
glycoside hydrolase
L3_105_000G1_scaffold_171_3
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4746..7154
DNA (2409bp) protein (803aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CV15_BACPM
Uncharacterized protein {ECO:0000313|EMBL:EDY97031.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
six-hairpin glycosidase
L3_105_000G1_scaffold_171_4
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7189..9435
DNA (2247bp) protein (749aa)
Peptidase, S9A/B/C family, catalytic domain protein {ECO:0000313|EMBL:EDY97032.1}; EC=3.4.-.- {ECO:0000313|EMBL:EDY97032.1};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
Peptidase, S9A/B/C family, catalytic domain protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CV16_BACPM
peptidase
L3_105_000G1_scaffold_171_5
unknown

Not on your lists

comp(9613..9981)
DNA (369bp) protein (123aa)

This feature has no annotations

L3_105_000G1_scaffold_171_6
unknown

Not on your lists

comp(10002..11789)
DNA (1788bp) protein (596aa)

This feature has no annotations

L3_105_000G1_scaffold_171_7
Bacteroides sp. CAG:714, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12221..12985)
DNA (765bp) protein (255aa)
UPF0246 protein BN762_00431 n=1 Tax=Bacteroides sp. CAG:714 RepID=R6Y9P2_9BACE
UPF0246 protein BN762_00431 {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=1262749 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:714.;"
hypothetical protein
L3_105_000G1_scaffold_171_8
Bacteroides coprocola, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13167..13679
DNA (513bp) protein (171aa)
Redoxin family protein n=1 Tax=Bacteroides coprocola CAG:162 RepID=R6CGN6_9BACE
Redoxin family protein {ECO:0000313|EMBL:EDV00648.1}; TaxID=470145 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprocola DSM 17136.;"
protein disulfide isomerase
L3_105_000G1_scaffold_171_9
Bacteroides sp. CAG:1076, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13789..17013)
DNA (3225bp) protein (1075aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1262735 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:1076.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.4.16)
Carbamoyl-phosphate synthase large subunit n=1 Tax=Bacteroides sp. CAG:1076 RepID=R5MIG8_9BACE
L3_105_000G1_scaffold_171_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17530..17961
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X7P6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12366.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
lipoprotein
L3_105_000G1_scaffold_171_11
Bacteroides coprocola, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18074..19165
DNA (1092bp) protein (364aa)
Tryptophan--tRNA ligase {ECO:0000313|EMBL:EDV00652.1}; EC=6.1.1.2 {ECO:0000313|EMBL:EDV00652.1};; TaxID=470145 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprocola DSM 17136.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JK72_9BACE
L3_105_000G1_scaffold_171_12
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19580..20053
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5W7C8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ88502.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
L3_105_000G1_scaffold_171_13
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20159..21001
DNA (843bp) protein (281aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VEA0_9BACE
cyclophilin type peptidyl-prolyl cis-trans isomerase
L3_105_000G1_scaffold_171_14
Bacteroides coprophilus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21090..22325
DNA (1236bp) protein (412aa)
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:EEF77183.1}; EC=3.4.24.- {ECO:0000313|EMBL:EEF77183.1};; TaxID=547042 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprophilus DSM 18228 = JCM 13818.;"
Peptidase M16 inactive domain protein n=1 Tax=Bacteroides coprophilus DSM 18228 = JCM 13818 RepID=S0F9U5_9BACE
peptidase M16 domain-containing protein
L3_105_000G1_scaffold_171_15
Bacteroides sp. CAG:875, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22334..23659
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:875 RepID=R7AW92_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDD49817.1}; TaxID=1262752 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:875.;"
MATE efflux family protein
L3_105_000G1_scaffold_171_16
Bacteroides coprophilus CAG:333, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23663..26191
DNA (2529bp) protein (843aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Bacteroides coprophilus CAG:333 RepID=R6SE21_9BACE
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CDC53611.1}; TaxID=1263041 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides coprophilus CAG:333.;"
integral membrane sensor hybrid histidine kinase
L3_105_000G1_scaffold_171_17
Bacteroides sp. CAG:875, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26273..27619
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:875 RepID=R6ZMR8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDD49828.1}; TaxID=1262752 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:875.;"
two component, sigma54 specific, transcriptional regulator, Fis family
L3_105_000G1_scaffold_171_18
Bacteroides coprocola CAG:162, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28102..28776)
DNA (675bp) protein (225aa)
Pseudouridine synthase n=2 Tax=Bacteroides RepID=R6CMH3_9BACE
Pseudouridine synthase {ECO:0000313|EMBL:CDA72736.1}; TaxID=1263040 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides coprocola CAG:162.;"
ribosomal large subunit pseudouridine synthase D
L3_105_000G1_scaffold_171_19

Not on your lists

comp(28781..29527)
DNA (747bp) protein (249aa)
3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=gut metagenome RepID=J9CZ76_9ZZZZ
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:EJX05561.1}; TaxID=749906 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="gut metagenome.;"
3-oxoacyl-ACP reductase
L3_105_000G1_scaffold_171_20
Bacteroides plebeius CAG:211, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29551..30147)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Bacteroides plebeius CAG:211 RepID=R5VRU0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ86266.1}; TaxID=1263052 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides plebeius CAG:211.;"
regulatory protein TetR
L3_105_000G1_scaffold_171_21
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30771..33776
DNA (3006bp) protein (1002aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Bacteroides vulgatus CL09T03C04 RepID=I9UI34_BACVU
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EIY81913.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
putative TonB-linked outer membrane protein
L3_105_000G1_scaffold_171_22
Bacteroides sp. CAG:1076, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33791..35500
DNA (1710bp) protein (570aa)
Outer membrane protein n=1 Tax=Bacteroides sp. CAG:1076 RepID=R5MHE3_9BACE
Outer membrane protein {ECO:0000313|EMBL:CCY90893.1}; TaxID=1262735 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:1076.;"
putative outer membrane protein probably involved in nutrient binding
L3_105_000G1_scaffold_171_23
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36142..37089
DNA (948bp) protein (316aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
Cysteine synthase A n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D073_BACPM
cysteine synthase
L3_105_000G1_scaffold_171_24
Bacteroides sp. CAG:1076, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

37114..38400
DNA (1287bp) protein (429aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase n=1 Tax=Bacteroides sp. CAG:1076 RepID=R5MKP0_9BACE
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase {ECO:0000313|EMBL:CCY92320.1}; TaxID=1262735 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:1076.;"
L3_105_000G1_scaffold_171_25
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38391..39032)
DNA (642bp) protein (214aa)
Transcriptional regulator n=5 Tax=Bacteroides RepID=A6KXF8_BACV8
transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:EET16750.2}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
L3_105_000G1_scaffold_171_26
Alloprevotella tannerae, Alloprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39083..39478)
DNA (396bp) protein (132aa)
Glyoxalase family protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LF03_9BACT
Glyoxalase family protein {ECO:0000313|EMBL:EEX72322.1}; TaxID=626522 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Alloprevotella.;" source="Prevotella tannerae ATCC 51259.;"
glyoxalase/bleomycin resistance protein/dioxygenase
L3_105_000G1_scaffold_171_27

Not on your lists

comp(39797..42283)
DNA (2487bp) protein (829aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=U3KUU9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AFK82647.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
alpha-L-arabinofuranosidase
L3_105_000G1_scaffold_171_28
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(42302..44215)
DNA (1914bp) protein (638aa)
Glycosyl hydrolase, family 43 n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D3X8_BACPM
Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EDY94278.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
glycoside hydrolase family protein
L3_105_000G1_scaffold_171_29
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44700..46253)
DNA (1554bp) protein (518aa)
Peptidase, M28 family {ECO:0000313|EMBL:EEU49769.1}; EC=3.4.-.- {ECO:0000313|EMBL:EEU49769.1};; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
Peptidase, M28 family n=1 Tax=Parabacteroides sp. D13 RepID=C7XEK5_9PORP
aminopeptidase
L3_105_000G1_scaffold_171_30
Bacteroides sp. CAG:443, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

46671..47585
DNA (915bp) protein (305aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1262739 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:443.;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Bacteroides sp. CAG:443 RepID=R6N242_9BACE
mraW; S-adenosyl-methyltransferase MraW
Displaying items 1-30 of 77 in total

View Taxonomy