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L3_105_000G1_scaffold_304

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000G1_scaffold_304_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

147..473
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK32_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83607.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_105_000G1_scaffold_304_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

520..1461
DNA (942bp) protein (314aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FK31_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23529.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Domain of unknown function (DUF1848).
L3_105_000G1_scaffold_304_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1612..3444
DNA (1833bp) protein (611aa)
Pyridine nucleotide-disulfide oxidoreductase n=2 Tax=Clostridium RepID=R6PJ41_9CLOT
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:CDC23530.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
NADPH-dependent glutamate synthase beta chain and related oxidoreductases
L3_105_000G1_scaffold_304_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3438..5210
DNA (1773bp) protein (591aa)
Hydrogenase, Fe-only {ECO:0000313|EMBL:EEA83613.1}; EC=1.12.-.- {ECO:0000313|EMBL:EEA83613.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hydrogenases, Fe-only (EC:1.6.5.3)
Hydrogenase, Fe-only n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK28_9CLOT
L3_105_000G1_scaffold_304_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5396..6001
DNA (606bp) protein (202aa)
4Fe-4S binding domain protein n=2 Tax=Clostridium RepID=B6FK27_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23532.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
(4Fe-4S)-binding protein
L3_105_000G1_scaffold_304_6
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5998..7488
DNA (1491bp) protein (497aa)
ABC transporter, substrate-binding protein, QAT family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF19_9CLOT
ABC transporter, substrate-binding protein, QAT family {ECO:0000313|EMBL:EEG29921.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
osmoprotectant ABC transporter substrate-binding/permease
L3_105_000G1_scaffold_304_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7500..8294
DNA (795bp) protein (265aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FK23_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23535.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glycine/betaine ABC transporter ATP-binding protein
L3_105_000G1_scaffold_304_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8430..8969
DNA (540bp) protein (180aa)
Rubrerythrin n=2 Tax=Clostridium RepID=B6FK22_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23536.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Rubrerythrin
L3_105_000G1_scaffold_304_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9161..10597
DNA (1437bp) protein (479aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
adenylosuccinate lyase (EC:4.3.2.2)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6QNN6_9CLOT
L3_105_000G1_scaffold_304_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10612..11889
DNA (1278bp) protein (426aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
purA; adenylosuccinate synthetase PurA (EC:6.3.4.4)
Adenylosuccinate synthetase n=2 Tax=Clostridium RepID=B6FK20_9CLOT
L3_105_000G1_scaffold_304_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12001..13467
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PS42_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23539.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Fe-S oxidoreductase
L3_105_000G1_scaffold_304_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13658..14716
DNA (1059bp) protein (353aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FK18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23540.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_105_000G1_scaffold_304_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14742..16919)
DNA (2178bp) protein (726aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYN3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23541.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
L3_105_000G1_scaffold_304_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16924..19449)
DNA (2526bp) protein (842aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QNP0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23542.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
L3_105_000G1_scaffold_304_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19646..20239
DNA (594bp) protein (198aa)
Transcriptional regulator, TetR family n=2 Tax=Clostridium RepID=B6FK15_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEA83627.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
transcriptional regulator, TetR family
L3_105_000G1_scaffold_304_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20441..21277
DNA (837bp) protein (279aa)
Transcription antiterminator LicT n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK14_9CLOT
Transcription antiterminator LicT {ECO:0000313|EMBL:EEA83626.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
bglg family transcriptional antiterminator
L3_105_000G1_scaffold_304_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21416..23305
DNA (1890bp) protein (630aa)
PTS system, beta-glucoside-specific, IIABC component {ECO:0000313|EMBL:EEA83625.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EEA83625.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
PTS system, beta-glucoside-specific, IIABC component n=2 Tax=Clostridium RepID=B6FK13_9CLOT
PTS system beta-glucoside-specific IIA component, Glc family (TC 4.A.1.2.5)/PTS system beta-glucoside-specific IIB component, Glc family (TC 4.A.1.2.5)/PTS system beta-glucoside-specific IIC component, Glc family (TC 4.A.1.2.5)
L3_105_000G1_scaffold_304_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23328..24779
DNA (1452bp) protein (484aa)
Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosid ase (EC:3.2.1.21)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYN7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23546.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_105_000G1_scaffold_304_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24925..26301
DNA (1377bp) protein (459aa)
Tryptophan synthase {ECO:0000256|SAAS:SAAS00015859}; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
pyridoxal-phosphate dependent TrpB-like enzyme (EC:4.2.1.20)
Pyridoxal-phosphate dependent TrpB-like enzyme n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK10_9CLOT
L3_105_000G1_scaffold_304_20
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26365..27030
DNA (666bp) protein (222aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WTM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX72092.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L3_105_000G1_scaffold_304_21
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27120..28034
DNA (915bp) protein (305aa)
ABC transporter, ATP-binding protein n=4 Tax=Lachnospiraceae RepID=A5KKY9_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDK25090.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
hypothetical protein
L3_105_000G1_scaffold_304_22
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28027..28851
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6W6V9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD06838.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L3_105_000G1_scaffold_304_23
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28869..29780
DNA (912bp) protein (304aa)
Putative sensor histidine kinase n=1 Tax=Clostridium sp. D5 RepID=F0Z3K7_9CLOT
Putative sensor histidine kinase {ECO:0000313|EMBL:EGB91271.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
histidine kinase
L3_105_000G1_scaffold_304_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29908..31224
DNA (1317bp) protein (439aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PYN9_9CLOT
Putative permease {ECO:0000313|EMBL:EEA83618.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
uracil-xanthine permease
L3_105_000G1_scaffold_304_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31358..33385
DNA (2028bp) protein (676aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK05_9CLOT
L3_105_000G1_scaffold_304_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33406..34386
DNA (981bp) protein (327aa)
Lysophospholipase (EC:3.1.1.5)
Hydrolase, alpha/beta domain protein n=2 Tax=Clostridium RepID=B6FK04_9CLOT
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:EEA83616.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_105_000G1_scaffold_304_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34406..35455
DNA (1050bp) protein (350aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Clostridium nexile CAG:348 RepID=R6PS53_9CLOT
L3_105_000G1_scaffold_304_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35562..36788
DNA (1227bp) protein (409aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK01_9CLOT
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEA83695.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hydrogenase large subunit domain-containing protein
L3_105_000G1_scaffold_304_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36874..38043
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYP2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23556.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
FliB family protein
L3_105_000G1_scaffold_304_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38055..39269
DNA (1215bp) protein (405aa)
Exonuclease SbcCD, D subunit n=2 Tax=Clostridium RepID=B6FJZ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23557.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
sbcD; exonuclease SbcD
Displaying items 1-30 of 62 in total

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