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L3_105_000G1_scaffold_483

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000G1_scaffold_483_1
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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221..1453
DNA (1233bp) protein (411aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=E4LQD3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR39062.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
conserved hypothetical protein
L3_105_000G1_scaffold_483_2
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1499..2461
DNA (963bp) protein (321aa)
Exonuclease n=2 Tax=Firmicutes RepID=E4LQD2_9CLOT
Exonuclease {ECO:0000313|EMBL:EFR38912.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_105_000G1_scaffold_483_3
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2448..2876
DNA (429bp) protein (143aa)
Uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=H1B9U7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO27837.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
L3_105_000G1_scaffold_483_4
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3187..3570)
DNA (384bp) protein (128aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LQD0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR39074.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L3_105_000G1_scaffold_483_5
unknown

Not on your lists

3934..4059
DNA (126bp) protein (42aa)

This feature has no annotations

L3_105_000G1_scaffold_483_6
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4028..4915
DNA (888bp) protein (296aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=4 Tax=Firmicutes RepID=E4LQC9_9CLOT
L3_105_000G1_scaffold_483_7
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4953..6245
DNA (1293bp) protein (431aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=3 Tax=Firmicutes RepID=E4LQC8_9CLOT
L3_105_000G1_scaffold_483_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6242..7321
DNA (1080bp) protein (360aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Carbamoyl-phosphate synthase small chain n=3 Tax=Firmicutes RepID=H1B9U3_9FIRM
carbamoyl-phosphate synthase small subunit
L3_105_000G1_scaffold_483_9
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7323..10538
DNA (3216bp) protein (1072aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Carbamoyl-phosphate synthase large chain n=4 Tax=Firmicutes RepID=E4LQC6_9CLOT
carB; carbamoyl phosphate synthase large subunit
L3_105_000G1_scaffold_483_10
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10540..11286
DNA (747bp) protein (249aa)
Dihydroorotate dehydrogenase, electron transfer subunit {ECO:0000313|EMBL:EFR39035.1}; EC=1.3.5.2 {ECO:0000313|EMBL:EFR39035.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Dihydroorotate dehydrogenase, electron transfer subunit n=2 Tax=Firmicutes RepID=E4LQC5_9CLOT
dihydroorotate dehydrogenase electron transfer subunit
L3_105_000G1_scaffold_483_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11286..12194
DNA (909bp) protein (303aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
dihydroorotate oxidase B, catalytic subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase n=2 Tax=Firmicutes RepID=H1B9U0_9FIRM
L3_105_000G1_scaffold_483_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12194..12895
DNA (702bp) protein (234aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=5 Tax=Firmicutes RepID=E4LQC3_9CLOT
L3_105_000G1_scaffold_483_13
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12896..13534
DNA (639bp) protein (213aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
pyrE; Orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=5 Tax=Firmicutes RepID=E4LQC2_9CLOT
L3_105_000G1_scaffold_483_14
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13631..14707
DNA (1077bp) protein (359aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
Carbamoyl-phosphate synthase small chain n=4 Tax=Firmicutes RepID=E4LQC1_9CLOT
carbamoyl-phosphate synthase small subunit
L3_105_000G1_scaffold_483_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14709..17927
DNA (3219bp) protein (1073aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Carbamoyl-phosphate synthase large chain n=4 Tax=Firmicutes RepID=E4LQC0_9CLOT
carB; carbamoyl phosphate synthase large subunit
L3_105_000G1_scaffold_483_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18106..18855)
DNA (750bp) protein (250aa)
ABC transporter, permease protein n=5 Tax=Firmicutes RepID=E4LQB9_9CLOT
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:EQJ53187.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L3_105_000G1_scaffold_483_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18852..19859)
DNA (1008bp) protein (336aa)
NMT1/THI5-like protein n=5 Tax=Firmicutes RepID=E4LQB8_9CLOT
NMT1-like family protein {ECO:0000313|EMBL:EQJ53188.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L3_105_000G1_scaffold_483_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19856..20623)
DNA (768bp) protein (256aa)
ABC transporter, permease protein n=4 Tax=Firmicutes RepID=E4LQB7_9CLOT
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:EQJ53189.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L3_105_000G1_scaffold_483_19
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20610..21362)
DNA (753bp) protein (251aa)
ABC transporter, ATP-binding protein n=7 Tax=Firmicutes RepID=E4LQB6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY84492.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L3_105_000G1_scaffold_483_20
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21349..22539)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=E4LQB5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY84493.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Putative transcriptional regulator
L3_105_000G1_scaffold_483_21
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

22780..23997
DNA (1218bp) protein (406aa)
Transporter, major facilitator family protein n=5 Tax=Firmicutes RepID=E4LQB4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC82704.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
major facilitator superfamily protein
L3_105_000G1_scaffold_483_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24010..24768
DNA (759bp) protein (253aa)
Phosphorylase family n=2 Tax=Clostridiales RepID=E4LQB3_9CLOT
Phosphorylase superfamily protein {ECO:0000313|EMBL:EQJ53193.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
purine or other phosphorylase family 1
L3_105_000G1_scaffold_483_23
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24953..25774
DNA (822bp) protein (274aa)
Uncharacterized protein n=5 Tax=Erysipelotrichaceae RepID=G1VW77_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC82708.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
oxidoreductase
L3_105_000G1_scaffold_483_24
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26439..28694
DNA (2256bp) protein (752aa)
Formate C-acetyltransferase {ECO:0000313|EMBL:EFR39098.1}; EC=2.3.1.54 {ECO:0000313|EMBL:EFR39098.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
formate acetyltransferase 1 (EC:2.3.1.54)
Formate C-acetyltransferase n=3 Tax=Firmicutes RepID=E4LQB1_9CLOT
L3_105_000G1_scaffold_483_25
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

28756..29496
DNA (741bp) protein (247aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
act2; pyruvate formate-lyase-activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase 1-activating enzyme n=5 Tax=Firmicutes RepID=E4LQB0_9CLOT
L3_105_000G1_scaffold_483_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29697..30584
DNA (888bp) protein (296aa)
Fructose-bisphosphate aldolase class 1 {ECO:0000313|EMBL:EQJ53198.1}; EC=4.1.2.13 {ECO:0000313|EMBL:EQJ53198.1};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Fructose-1,6-bisphosphate aldolase n=5 Tax=Firmicutes RepID=E4LQA9_9CLOT
hypothetical protein
L3_105_000G1_scaffold_483_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30657..31331)
DNA (675bp) protein (225aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LQA8_9CLOT
PAP2 superfamily protein {ECO:0000313|EMBL:EQJ53199.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
PAP2 superfamily.
L3_105_000G1_scaffold_483_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31412..31762)
DNA (351bp) protein (117aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LQA7_9CLOT
DsrE/DsrF-like family protein {ECO:0000313|EMBL:EQJ53200.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
dsrE/DsrF-like family protein
L3_105_000G1_scaffold_483_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31945..32916
DNA (972bp) protein (324aa)
phosphotransacetylase (EC:2.3.1.8)
Phosphate acetyltransferase n=5 Tax=Firmicutes RepID=E4LQA6_9CLOT
Phosphate acetyl/butaryl transferase family protein {ECO:0000313|EMBL:EQJ53201.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_105_000G1_scaffold_483_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33033..33905)
DNA (873bp) protein (291aa)
LysR substrate binding domain protein n=7 Tax=Firmicutes RepID=E4LQA5_9CLOT
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:EQJ53202.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
LysR family transcriptional regulator
Displaying items 1-30 of 50 in total

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