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L3_105_000G1_scaffold_514

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000G1_scaffold_514_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(468..1067)
DNA (600bp) protein (200aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6AQ50_9PORP
L3_105_000G1_scaffold_514_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1149..1553)
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ADS2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87214.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transmembrane protein
L3_105_000G1_scaffold_514_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1577..2791)
DNA (1215bp) protein (405aa)
Cysteine desulfurase {ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|SAAS:SAAS00062216};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Cysteine desulfurase, SufS subfamily n=2 Tax=Parabacteroides merdae RepID=A7ADS3_9PORP
aminotransferase
L3_105_000G1_scaffold_514_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3098..3886)
DNA (789bp) protein (263aa)
Glycosyl hydrolase family 16 n=2 Tax=Parabacteroides RepID=A7ADS4_9PORP
Glycosyl hydrolase family 16 {ECO:0000313|EMBL:CDD12172.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
putative endo-beta-galactosidase
L3_105_000G1_scaffold_514_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3996..6680)
DNA (2685bp) protein (895aa)
Glycosyl hydrolase family 2, sugar binding domain protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7ADS5_9PORP
Glycosyl hydrolase family 2, sugar binding domain protein {ECO:0000313|EMBL:EDN87217.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
beta-glycosidase
L3_105_000G1_scaffold_514_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6712..6825
DNA (114bp) protein (38aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZBR4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08816.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_105_000G1_scaffold_514_7
unknown

Not on your lists

6822..7025
DNA (204bp) protein (68aa)

This feature has no annotations

L3_105_000G1_scaffold_514_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6980..9031)
DNA (2052bp) protein (684aa)
Glycosyl hydrolase family 20, catalytic domain protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7ADS6_9PORP
Glycosyl hydrolase family 20, catalytic domain protein {ECO:0000313|EMBL:EDN87218.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glycoside hydrolase
L3_105_000G1_scaffold_514_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9169..10719)
DNA (1551bp) protein (517aa)
Uncharacterized protein n=5 Tax=Parabacteroides RepID=K5Z029_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12178.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_105_000G1_scaffold_514_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10733..14023)
DNA (3291bp) protein (1097aa)
SusC/RagA family TonB-linked outer membrane protein n=2 Tax=Parabacteroides merdae RepID=K5ZT64_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EKN08813.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_105_000G1_scaffold_514_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14279..15226)
DNA (948bp) protein (316aa)
Sigma factor regulatory protein FecR/PupR family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WS45_9PORP
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EDN87223.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
anti-FecI sigma factor, FecR
L3_105_000G1_scaffold_514_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15648..15794
DNA (147bp) protein (49aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K5Y7B5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN09102.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_105_000G1_scaffold_514_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15791..15928
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WV39_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13175.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_105_000G1_scaffold_514_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15994..16578
DNA (585bp) protein (195aa)
Sigma-70 family RNA polymerase sigma factor n=2 Tax=Parabacteroides merdae RepID=K5ZD04_9PORP
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKN09100.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
RNA polymerase ECF-type sigma factor
L3_105_000G1_scaffold_514_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16659..17870
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZT68_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN09099.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
anti-sigma factor
L3_105_000G1_scaffold_514_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17987..21352
DNA (3366bp) protein (1122aa)
SusC/RagA family TonB-linked outer membrane protein n=2 Tax=Parabacteroides merdae RepID=K6A097_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EKN09098.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
TonB-dependent receptor
L3_105_000G1_scaffold_514_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21373..22845
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Y7B1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN09097.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
RagB/SusD domain-containing protein
L3_105_000G1_scaffold_514_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22955..25723
DNA (2769bp) protein (923aa)
Beta-galactosidase {ECO:0000256|SAAS:SAAS00046490}; EC=3.2.1.23 {ECO:0000256|SAAS:SAAS00046490};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WR01_9PORP
family 2 glycoside hydrolase
L3_105_000G1_scaffold_514_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26016..29201
DNA (3186bp) protein (1062aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6B261_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EKN09095.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
TonB-dependent receptor plug
L3_105_000G1_scaffold_514_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29216..30700
DNA (1485bp) protein (495aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZT75_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN09094.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
RagB/SusD domain-containing protein
L3_105_000G1_scaffold_514_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30842..33127
DNA (2286bp) protein (762aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A091_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN09093.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
alpha-mannosidase
L3_105_000G1_scaffold_514_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33309..33875
DNA (567bp) protein (189aa)
RNA polymerase sigma-70 factor, expansion family 1 n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Y7A6_9PORP
RNA polymerase sigma-70 factor, expansion family 1 {ECO:0000313|EMBL:EKN09092.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
RNA polymerase, sigma-24 subunit, ECF subfamily
L3_105_000G1_scaffold_514_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34035..34415)
DNA (381bp) protein (127aa)
Glyoxalase family protein n=3 Tax=Parabacteroides merdae RepID=A7ADU3_9PORP
Glyoxalase family protein {ECO:0000313|EMBL:EDN87235.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
acetyltransferase
L3_105_000G1_scaffold_514_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34425..35768)
DNA (1344bp) protein (448aa)
FeS assembly protein SufD n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6B266_9PORP
FeS assembly protein SufD {ECO:0000313|EMBL:EKN09090.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
ABC transporter
L3_105_000G1_scaffold_514_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35831..36586)
DNA (756bp) protein (252aa)
FeS assembly ATPase SufC n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZT80_9PORP
FeS assembly ATPase SufC {ECO:0000313|EMBL:EKN09089.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
ABC transporter ATP-binding protein
L3_105_000G1_scaffold_514_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36675..38120)
DNA (1446bp) protein (482aa)
FeS assembly protein SufB n=4 Tax=Parabacteroides RepID=A7ADU6_9PORP
UPF0051 protein {ECO:0000313|EMBL:EKN09088.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
cysteine desulfurase activator complex subunit SufB
L3_105_000G1_scaffold_514_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38154..38645)
DNA (492bp) protein (164aa)
CvpA family protein n=3 Tax=Parabacteroides RepID=A7ADU7_9PORP
CvpA family protein {ECO:0000313|EMBL:EDN87239.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_105_000G1_scaffold_514_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38648..41620)
DNA (2973bp) protein (991aa)
Translation initiation factor IF-2 n=2 Tax=Parabacteroides RepID=K6B2Y4_9PORP
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
infB; translation initiation factor IF-2
L3_105_000G1_scaffold_514_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(41641..42915)
DNA (1275bp) protein (425aa)
Transcription termination factor NusA n=4 Tax=Parabacteroides RepID=A7ADU9_9PORP
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
nusA; transcription elongation factor NusA
L3_105_000G1_scaffold_514_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(42923..43396)
DNA (474bp) protein (158aa)
Ribosome maturation factor RimP n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7ADV0_9PORP
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
Displaying items 1-30 of 54 in total

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