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L3_105_000G1_scaffold_462

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Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000G1_scaffold_462_1
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

2..820
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8K2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44874.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_105_000G1_scaffold_462_2
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

956..2833
DNA (1878bp) protein (626aa)
Radical SAM domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8K3_9ACTN
Radical SAM domain protein {ECO:0000313|EMBL:EEP44875.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
Radical SAM domain protein
L3_105_000G1_scaffold_462_3
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

2830..3651
DNA (822bp) protein (274aa)
Radical SAM-linked protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8K4_9ACTN
Radical SAM-linked protein {ECO:0000313|EMBL:EEP44876.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_105_000G1_scaffold_462_4
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


3767..4132
DNA (366bp) protein (122aa)
50S ribosomal protein L21 n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8K5_9ACTN
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
LSU ribosomal protein L21P
L3_105_000G1_scaffold_462_5
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


4171..4425
DNA (255bp) protein (85aa)
50S ribosomal protein L27 n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8K6_9ACTN
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
LSU ribosomal protein L27P
L3_105_000G1_scaffold_462_6
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

4661..6103
DNA (1443bp) protein (481aa)
GTPase Obg n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8K7_9ACTN
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
GTP-binding protein Obg/CgtA
L3_105_000G1_scaffold_462_7
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

6090..6749
DNA (660bp) protein (220aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8K8_9ACTN
L3_105_000G1_scaffold_462_8
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

6754..7356
DNA (603bp) protein (201aa)
Hydrolase, HD family n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8K9_9ACTN
Hydrolase, HD family {ECO:0000313|EMBL:EEP44881.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
metal dependent phosphohydrolase
L3_105_000G1_scaffold_462_9
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

7379..7834
DNA (456bp) protein (152aa)
Ribosomal silencing factor RsfS n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8L0_9ACTN
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
iojap family protein
L3_105_000G1_scaffold_462_10
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(7927..8751)
DNA (825bp) protein (275aa)
Glycosyltransferase, family 8 n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8L1_9ACTN
Glycosyltransferase, family 8 {ECO:0000313|EMBL:EEP44883.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
RfaJ; lipopolysaccharide biosynthesis protein
L3_105_000G1_scaffold_462_11
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8928..10226)
DNA (1299bp) protein (433aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8L3_9ACTN
L3_105_000G1_scaffold_462_12
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


10421..10777
DNA (357bp) protein (119aa)
30S ribosomal protein S16 n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8L5_9ACTN
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
SSU ribosomal protein S16P
L3_105_000G1_scaffold_462_13
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

10781..11092
DNA (312bp) protein (104aa)
UPF0109 protein COLINT_02387 n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8L6_9ACTN
UPF0109 protein COLINT_02387 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
RNA-binding protein
L3_105_000G1_scaffold_462_14
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

11097..11612
DNA (516bp) protein (172aa)
Ribosome maturation factor RimM n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8L7_9ACTN
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
16S rRNA processing protein RimM
L3_105_000G1_scaffold_462_15
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

11631..12422
DNA (792bp) protein (264aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8L8_9ACTN
L3_105_000G1_scaffold_462_16
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

12415..13047
DNA (633bp) protein (211aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8L9_9ACTN
L3_105_000G1_scaffold_462_17
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

13099..14016
DNA (918bp) protein (306aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
Glycine--tRNA ligase alpha subunit n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8M0_9ACTN
L3_105_000G1_scaffold_462_18
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

14017..16107
DNA (2091bp) protein (697aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
glycyl-tRNA synthetase subunit beta (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8M1_9ACTN
L3_105_000G1_scaffold_462_19
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

16297..17169
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8M2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44894.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_105_000G1_scaffold_462_20
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

17372..20095
DNA (2724bp) protein (908aa)
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EEP44895.1}; EC=2.7.9.1 {ECO:0000313|EMBL:EEP44895.1};; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8M3_9ACTN
L3_105_000G1_scaffold_462_21
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

20306..21985
DNA (1680bp) protein (560aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8M5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44897.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
RNA-metabolising metallo-beta-lactamase
L3_105_000G1_scaffold_462_22
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

21987..24701
DNA (2715bp) protein (905aa)
FtsK/SpoIIIE family protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8M6_9ACTN
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:EEP44898.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
cell division protein FtsK/SpoIIIE
L3_105_000G1_scaffold_462_23
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

24702..26099
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8M7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44899.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_105_000G1_scaffold_462_24
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

26139..26636
DNA (498bp) protein (166aa)
UPF0234 protein COLINT_02399 n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8M8_9ACTN
UPF0234 protein COLINT_02399 {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_105_000G1_scaffold_462_25
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

26646..27983
DNA (1338bp) protein (446aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
30S ribosomal protein S12P methylthiotransferase (EC:2.-.-.-)
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8M9_9ACTN
L3_105_000G1_scaffold_462_26
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

27989..28639
DNA (651bp) protein (217aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EEP44902.1}; EC=2.7.8.5 {ECO:0000313|EMBL:EEP44902.1};; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8N0_9ACTN
L3_105_000G1_scaffold_462_27
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

28723..29247
DNA (525bp) protein (175aa)
Competence/damage-inducible domain protein CinA n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8N1_9ACTN
Competence/damage-inducible domain protein CinA {ECO:0000313|EMBL:EEP44903.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
CinA domain-containing protein
L3_105_000G1_scaffold_462_28
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


29486..30586
DNA (1101bp) protein (367aa)
Protein RecA n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8N3_9ACTN
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
RecA protein
L3_105_000G1_scaffold_462_29
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

30601..31272
DNA (672bp) protein (224aa)
Regulatory protein RecX n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8N4_9ACTN
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
regulatory protein RecX
L3_105_000G1_scaffold_462_30
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

31477..33036
DNA (1560bp) protein (520aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
Ribonuclease Y n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8N5_9ACTN
metal dependent phosphohydrolase
Displaying items 1-30 of 57 in total

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