ggKbase home page

L3_105_000M1_scaffold_71

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_71_1
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


2..631
DNA (630bp) protein (210aa)
30S ribosomal protein S2 n=4 Tax=Bacteroides RepID=B0NWB6_BACSE
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
30S ribosomal protein S2
L3_105_000M1_scaffold_71_2
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

712..1647
DNA (936bp) protein (312aa)
Elongation factor Ts n=3 Tax=Bacteroides RepID=B0NWB5_BACSE
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1073351 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris CC31F.;"
translation elongation factor Ts (EF-Ts)
L3_105_000M1_scaffold_71_3
Bacteroides stercoris CAG:120, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1738..2097)
DNA (360bp) protein (120aa)
Putative translation initiation factor SUI1 n=1 Tax=Bacteroides stercoris CAG:120 RepID=R6A5U9_9BACE
Putative translation initiation factor SUI1 {ECO:0000313|EMBL:CDA47273.1}; TaxID=1263053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides stercoris CAG:120.;"
putative translation initiation factor SUI1
L3_105_000M1_scaffold_71_4
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2267..2923
DNA (657bp) protein (219aa)
Redox-sensing transcriptional repressor Rex n=3 Tax=Bacteroides RepID=B0NWB3_BACSE
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1073351 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris CC31F.;"
CoA-binding domain protein
L3_105_000M1_scaffold_71_5
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2923..3540
DNA (618bp) protein (206aa)
FAH family protein n=2 Tax=Bacteroides stercoris RepID=B0NWB2_BACSE
FAH family protein {ECO:0000313|EMBL:EDS13614.1}; TaxID=449673 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris ATCC 43183.;"
fumarylacetoacetate (FAA) hydrolase
L3_105_000M1_scaffold_71_6
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3700..4179
DNA (480bp) protein (160aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=449673 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris ATCC 43183.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=3 Tax=Bacteroides RepID=B0NWB1_BACSE
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
L3_105_000M1_scaffold_71_7
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4210..5229
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Bacteroides stercoris CC31F RepID=S3YCR5_BACSE
Uncharacterized protein {ECO:0000313|EMBL:EPH20799.1}; TaxID=1073351 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris CC31F.;"
metallophosphoesterase
L3_105_000M1_scaffold_71_8
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5230..6588)
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Bacteroides stercoris CC31F RepID=S3YT63_BACSE
Uncharacterized protein {ECO:0000313|EMBL:EPH20798.1}; TaxID=1073351 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris CC31F.;"
glycoside hydrolase family 28
L3_105_000M1_scaffold_71_9
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6692..7543)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Bacteroides stercoris CC31F RepID=S3YGQ2_BACSE
Uncharacterized protein {ECO:0000313|EMBL:EPH20797.1}; TaxID=1073351 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris CC31F.;"
hypothetical protein
L3_105_000M1_scaffold_71_10
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7580..8635)
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Bacteroides stercoris CC31F RepID=S3YEN1_BACSE
Uncharacterized protein {ECO:0000313|EMBL:EPH20796.1}; TaxID=1073351 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris CC31F.;"
phosphate-selective porin O and P
L3_105_000M1_scaffold_71_11
Bacteroides stercoris CAG:120, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8823..9905
DNA (1083bp) protein (361aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1263053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides stercoris CAG:120.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=2 Tax=Bacteroides RepID=R6A8E3_9BACE
L3_105_000M1_scaffold_71_12
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9943..11316
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Bacteroides stercoris CC31F RepID=S3YCR2_BACSE
Uncharacterized protein {ECO:0000313|EMBL:EPH20794.1}; TaxID=1073351 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris CC31F.;"
peptidase S8/S53
L3_105_000M1_scaffold_71_13
Bacteroides stercoris CAG:120, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11343..12590
DNA (1248bp) protein (416aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|SAAS:SAAS00195506};; TaxID=1263053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides stercoris CAG:120.;"
exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exonuclease VII large subunit n=1 Tax=Bacteroides stercoris CAG:120 RepID=R6A5U0_9BACE
L3_105_000M1_scaffold_71_14
Bacteroides stercoris CAG:120, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12599..12808
DNA (210bp) protein (70aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|SAAS:SAAS00198686};; TaxID=1263053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides stercoris CAG:120.;"
Uncharacterized protein n=3 Tax=Bacteroides RepID=B0NW64_BACSE
Exonuclease VII small subunit
L3_105_000M1_scaffold_71_15
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12966..13454
DNA (489bp) protein (163aa)
RNA polymerase sigma-70 factor n=3 Tax=Bacteroides RepID=B0NW63_BACSE
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EDS13565.1}; TaxID=449673 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris ATCC 43183.;"
RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, Bacteroides expansion family 1
L3_105_000M1_scaffold_71_16
Bacteroides stercoris CAG:120, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13535..14680
DNA (1146bp) protein (382aa)
Sigma factor regulatory protein, FecR/PupR family n=3 Tax=Bacteroides RepID=B0NW62_BACSE
Sigma factor regulatory protein FecR/PupR family {ECO:0000313|EMBL:CDA47258.1}; TaxID=1263053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides stercoris CAG:120.;"
Fe2+-dicitrate sensor, membrane component
L3_105_000M1_scaffold_71_17
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14839..18423
DNA (3585bp) protein (1195aa)
TonB-linked outer membrane protein, SusC/RagA family n=2 Tax=Bacteroides stercoris RepID=B0NW61_BACSE
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:EDS13563.1}; TaxID=449673 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris ATCC 43183.;"
hypothetical protein
L3_105_000M1_scaffold_71_18
Bacteroides stercoris CAG:120, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18445..20019
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Bacteroides stercoris CAG:120 RepID=R6AL53_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDA47256.1}; TaxID=1263053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides stercoris CAG:120.;"
hypothetical protein
L3_105_000M1_scaffold_71_19
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20048..20929
DNA (882bp) protein (294aa)
Uncharacterized protein n=3 Tax=Bacteroides RepID=B0NW59_BACSE
Uncharacterized protein {ECO:0000313|EMBL:EPH20787.1}; TaxID=1073351 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris CC31F.;"
hypothetical protein
L3_105_000M1_scaffold_71_20
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20942..22237
DNA (1296bp) protein (432aa)
Uncharacterized protein n=2 Tax=Bacteroides stercoris RepID=B0NW58_BACSE
Uncharacterized protein {ECO:0000313|EMBL:EDS13560.1}; TaxID=449673 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris ATCC 43183.;"
hypothetical protein
L3_105_000M1_scaffold_71_21
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22262..24064
DNA (1803bp) protein (601aa)
Uncharacterized protein n=2 Tax=Bacteroides stercoris RepID=B0NW57_BACSE
Uncharacterized protein {ECO:0000313|EMBL:EDS13559.1}; TaxID=449673 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris ATCC 43183.;"
hypothetical protein
L3_105_000M1_scaffold_71_22
Bacteroides stercoris CAG:120, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24088..25977
DNA (1890bp) protein (630aa)
Uncharacterized protein n=1 Tax=Bacteroides stercoris CAG:120 RepID=R6B1F0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDA47252.1}; TaxID=1263053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides stercoris CAG:120.;"
L3_105_000M1_scaffold_71_23
Bacteroides stercoris CAG:120, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26027..27478
DNA (1452bp) protein (484aa)
Clostripain family n=1 Tax=Bacteroides stercoris CAG:120 RepID=R6AL47_9BACE
Clostripain family {ECO:0000313|EMBL:CDA47251.1}; TaxID=1263053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides stercoris CAG:120.;"
clostripain-like protein
L3_105_000M1_scaffold_71_24
unknown

Not on your lists

comp(27915..28109)
DNA (195bp) protein (65aa)

This feature has no annotations

L3_105_000M1_scaffold_71_25
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28206..29075)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MZM8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDS03064.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
hypothetical protein
L3_105_000M1_scaffold_71_26
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29072..29656)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis HMW 610 RepID=K1GHA8_BACFG
Uncharacterized protein {ECO:0000313|EMBL:EKA90981.1}; TaxID=1073386 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 610.;"
hypothetical protein
L3_105_000M1_scaffold_71_27
unknown

Not on your lists

29952..31154
DNA (1203bp) protein (401aa)

This feature has no annotations

L3_105_000M1_scaffold_71_28
unknown

Not on your lists

31157..31618
DNA (462bp) protein (154aa)

This feature has no annotations

L3_105_000M1_scaffold_71_29
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31615..33480
DNA (1866bp) protein (622aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis HMW 615 RepID=K1FQ47_BACFG
Uncharacterized protein {ECO:0000313|EMBL:EKA83305.1}; TaxID=1073387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 615.;"
hypothetical protein
L3_105_000M1_scaffold_71_30
Bacteroides fluxus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33527..34516
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Bacteroides fluxus YIT 12057 RepID=F3PUW3_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGF55843.1}; TaxID=763034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fluxus YIT 12057.;"
hypothetical protein
Displaying items 1-30 of 108 in total

View Taxonomy